RNA id: TU485059


Basic Information

Item Value
RNA id TU485059
length 232
lncRNA type intronic
GC content 0.44
exon number 1
gene id G422332
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6560486 ~ 6560717 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCACATTGGCCGCAATTATTGGCACCCAATTATTGCAACCTCCTTTTGCCAACAAGTCTTTTTCTAAAATGCCTGATGAGTTTGGAGAACACCTGACAAGAGATCAGAGATCATTCCTTCATACAGAATCTCTACAGATCCTTCAGATTCCCAGCTCCATGTTGGTGCTTCTTCTCTTCAGTTCACTCCACTCATTTTCTTTAGGGTTCAGGTCAGGGAACTGGGACGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485058 lncRNA downstream 477 6559787 ~ 6560009 (-) True G422331
TU485045 lncRNA downstream 41041 6510991 ~ 6519445 (-) True G422321
TU485038 lncRNA downstream 59455 6500719 ~ 6501031 (-) True G422318
TU484966 lncRNA downstream 111991 6447744 ~ 6448495 (-) True G422256
TU484951 lncRNA downstream 235492 6324459 ~ 6324994 (-) True G422246
TU485071 lncRNA upstream 51051 6611768 ~ 6612117 (-) True G422343
TU485081 lncRNA upstream 69861 6630578 ~ 6630875 (-) True G422353
TU485084 lncRNA upstream 70934 6631651 ~ 6633735 (-) False G422355
TU485086 lncRNA upstream 70934 6631651 ~ 6633786 (-) False G422355
TU485087 lncRNA upstream 70934 6631651 ~ 6633735 (-) True G422355
CI01000304_06515961_06519125.mRNA mRNA downstream 41361 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 50864 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 68292 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 76500 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 84120 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06659869_06667425.mRNA mRNA upstream 99107 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 145353 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 164982 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 177537 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 306400 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
TU484955 other downstream 76991 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 76991 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 76991 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 76991 6477451 ~ 6479033 (-) True G422250
TU484137 other downstream 1887539 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU485082 other upstream 70369 6631086 ~ 6631499 (-) True G422354
TU485117 other upstream 183962 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 1069442 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2301506 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 3007639 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706

Expression Profile