RNA id: TU485090


Basic Information

Item Value
RNA id TU485090
length 308
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G422357
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6635833 ~ 6636140 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTATTTTACCAGTTGTGGAATCCAACCATTCAACCATCTGAGGTAAGGTAGTTAGCCTACTTTGAGTACTTTTTCATTTTATGCAACTTTACACATTTGTTAATAGTAAATTAATAATTAATAAATTTAAGATCATGTTTGCAGCGAACAATATATTTTAGACCTAGTGGAGTAATAGTAATAATATCTAGGTCTGAATTGAAACAGGCTATATTGTACGTTTTAATGGATCACGCTACAAACATAACGATCTTATAATACATGATGCATTGCTGTCTCCGTTATCGCATAATTCACACTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485086 lncRNA downstream 2047 6631651 ~ 6633786 (-) False G422355
TU485084 lncRNA downstream 2098 6631651 ~ 6633735 (-) False G422355
TU485087 lncRNA downstream 2098 6631651 ~ 6633735 (-) True G422355
TU485081 lncRNA downstream 4958 6630578 ~ 6630875 (-) True G422353
TU485071 lncRNA downstream 23716 6611768 ~ 6612117 (-) True G422343
TU485092 lncRNA upstream 1086 6637226 ~ 6637448 (-) True G422359
TU485111 lncRNA upstream 50788 6686928 ~ 6687167 (-) True G422373
TU485166 lncRNA upstream 271245 6907385 ~ 6970870 (-) True G422420
TU485175 lncRNA upstream 335891 6972031 ~ 6972231 (-) True G422429
TU485182 lncRNA upstream 345948 6982088 ~ 6983628 (-) True G422436
CI01000304_06515961_06519125.mRNA mRNA downstream 116708 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 126211 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 143639 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 151847 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06473293_06476260.mRNA mRNA downstream 159467 6473293 ~ 6476366 (-) True CI01000304_06473293_06476260
CI01000304_06659869_06667425.mRNA mRNA upstream 23684 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06706476_06715064.mRNA mRNA upstream 69930 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 89559 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 102114 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 230977 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
TU485082 other downstream 4334 6631086 ~ 6631499 (-) True G422354
TU484955 other downstream 152338 6477451 ~ 6479033 (-) False G422250
TU485117 other upstream 108539 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 994019 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2226083 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2932216 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 3100606 9739353 ~ 9739471 (-) True G424168

Expression Profile