RNA id: TU485111


Basic Information

Item Value
RNA id TU485111
length 240
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G422373
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6686928 ~ 6687167 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACCCAGTCCTTAACGTAGATGTCTCCTTCCATTCTTTCCCTTAACTGTACATGCTCTTATCTGACCCAGCTACTGCCTTATACTTTCCCATGAGCAATGCATCCTATGGCTTGCAAAGGGAGCATAATTGCTAGTTAGAAGAACTTAATCAATGGTCTTCAAATTCTGTGTCTAGCCTCTTAAACCACTCATGCCCAGTGACAAACCACAAGGACCAACATTGCAGACCTTCCCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485092 lncRNA downstream 49480 6637226 ~ 6637448 (-) True G422359
TU485090 lncRNA downstream 50788 6635833 ~ 6636140 (-) True G422357
TU485086 lncRNA downstream 53142 6631651 ~ 6633786 (-) False G422355
TU485084 lncRNA downstream 53193 6631651 ~ 6633735 (-) False G422355
TU485087 lncRNA downstream 53193 6631651 ~ 6633735 (-) True G422355
TU485166 lncRNA upstream 220218 6907385 ~ 6970870 (-) True G422420
TU485175 lncRNA upstream 284864 6972031 ~ 6972231 (-) True G422429
TU485182 lncRNA upstream 294921 6982088 ~ 6983628 (-) True G422436
TU485183 lncRNA upstream 296528 6983695 ~ 6983943 (-) True G422437
TU485185 lncRNA upstream 299702 6986869 ~ 7024587 (-) False G422439
CI01000304_06659869_06667425.mRNA mRNA downstream 19429 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06515961_06519125.mRNA mRNA downstream 167803 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06507688_06509486.mRNA mRNA downstream 177306 6507542 ~ 6509622 (-) True CI01000304_06507688_06509486
CI01000304_06489010_06490993.mRNA mRNA downstream 194734 6488028 ~ 6492194 (-) True CI01000304_06489010_06490993
CI01000304_06480836_06483554.mRNA mRNA downstream 202942 6480743 ~ 6483986 (-) False CI01000304_06480836_06483554
CI01000304_06706476_06715064.mRNA mRNA upstream 18903 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06725873_06727044.mRNA mRNA upstream 38532 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06738434_06742551.mRNA mRNA upstream 51087 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06867535_06870134.mRNA mRNA upstream 179950 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
CI01000304_06881372_06883185.mRNA mRNA upstream 193887 6881054 ~ 6883185 (-) True CI01000304_06881372_06883185
TU485082 other downstream 55429 6631086 ~ 6631499 (-) True G422354
TU484955 other downstream 203433 6477451 ~ 6479033 (-) False G422250
TU485117 other upstream 57512 6744679 ~ 6783046 (-) True G422378
TU485601 other upstream 942992 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2175056 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2881189 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 3049579 9739353 ~ 9739471 (-) True G424168

Expression Profile