RNA id: TU485117



Basic Information


Item Value
RNA id TU485117
length 1056
RNA type TUCP
GC content 0.48
exon number 8
gene id G422378
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6744679 ~ 6783046 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTCAGTGCTAAAAGTGTAAAAGAGGTGCAGGTGTACACAAAGTAACAAGATAAATAGTATGCATGCATGCATACTGTACTTATAGTAACTGAACGTACCTGCTTGCATGGTGATCCCTATAGTCAAATTCAAAGCTGTGCAAAGAGTCAGCACAGGAGTCCATGTGATGCTGAAAGCGTGGCCCTATGGGATACTGGTGAAGTGAAGAGTTAGGCTGGGCTGTGGTGTGGTAGCGGGGAGGCAAACTACTGCTTGTCTCACTCCTATAGTCACTGTCTCGATCATCCACCGCACTGTCCAGGTCATCCAAAGAGCATTGAGAGGCAGCACAGGGCAGAGGGCGTCCCGCTACTTCATCCTGTAAGGGAAACTCATCGTGAATGCCCATAGCATTGATGCGTTCCAGTTTGCCGGTCCAGTATCGAGCTTCATCCTCTGGGATTTCGAAGGGCAGTTCAAAGCGAGTGTCTAGCAGGACTCTGTGTGGTGTTGGGTTTTTAGTCCCATATATCTCATCTGCCTTCATCAGAACTTCAGAGTCCAGAAATATCCATTCGCCAGGGCCCTCCTCCTCTGAATGGCAGATGCTTTTGAGCGGGATCCAGGCTGTTCCTAACATGGTGTCCCAGATGAGACCTTTGTTCCACACCTCTATAATGAGGCCCAGGTCCAGTCGGCTGATCTCAAACATGAAGTCCTGCTCCCAGCACGGCTGGTCTCCCCGCACAGTGATGGTGGTACTCTTCACATTTTGCACTTTCAGCGTCACATAGGCATTGAATTTATCTGGAGGTCCTTGGAGTTTGGCTTTCTTAACTCTCACGCAGAGGAGAGACATGGCAACCGAAGTTTTCCTCTTGGATAAATCCTGTCAGTGTAATCTAAGTTCTTCTCAGCTGTCCGGTGACATTTCAGATGATGCCACAAGTTTGTTCCTCGTCATTAGCGCACTACTGAGGGTAGATGAAGCTCGAAGGAGTAACTCAGCACTATCCTACAGGTGACGCGTACTGACTCAAATGTCCCATCGCCATGATCAAATTGTATGTTTAGAA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485111 lncRNA downstream 57512 6686928 ~ 6687167 (-) True G422373
TU485092 lncRNA downstream 107231 6637226 ~ 6637448 (-) True G422359
TU485090 lncRNA downstream 108539 6635833 ~ 6636140 (-) True G422357
TU485086 lncRNA downstream 110893 6631651 ~ 6633786 (-) False G422355
TU485084 lncRNA downstream 110944 6631651 ~ 6633735 (-) False G422355
TU485166 lncRNA upstream 124339 6907385 ~ 6970870 (-) True G422420
TU485175 lncRNA upstream 188985 6972031 ~ 6972231 (-) True G422429
TU485182 lncRNA upstream 199042 6982088 ~ 6983628 (-) True G422436
TU485183 lncRNA upstream 200649 6983695 ~ 6983943 (-) True G422437
TU485185 lncRNA upstream 203823 6986869 ~ 7024587 (-) False G422439
CI01000304_06738434_06742551.mRNA mRNA downstream 2128 6738254 ~ 6742551 (-) True CI01000304_06738434_06742551
CI01000304_06725873_06727044.mRNA mRNA downstream 17635 6725699 ~ 6727044 (-) True CI01000304_06725873_06727044
CI01000304_06706476_06715064.mRNA mRNA downstream 29615 6706070 ~ 6715064 (-) True CI01000304_06706476_06715064
CI01000304_06659869_06667425.mRNA mRNA downstream 77180 6659824 ~ 6667499 (-) True CI01000304_06659869_06667425
CI01000304_06515961_06519125.mRNA mRNA downstream 225554 6515896 ~ 6519125 (-) True CI01000304_06515961_06519125
CI01000304_06867535_06870134.mRNA mRNA upstream 84071 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
CI01000304_06881372_06883185.mRNA mRNA upstream 98008 6881054 ~ 6883185 (-) True CI01000304_06881372_06883185
CI01000304_06914589_06924928.mRNA mRNA upstream 130784 6913830 ~ 6925152 (-) True CI01000304_06914589_06924928
CI01000304_06931421_06933921.mRNA mRNA upstream 147692 6930738 ~ 6934059 (-) True CI01000304_06931421_06933921
CI01000304_06935639_06967113.mRNA mRNA upstream 152482 6935528 ~ 6969054 (-) True CI01000304_06935639_06967113
TU485082 other downstream 113180 6631086 ~ 6631499 (-) True G422354
TU484955 other downstream 261184 6477451 ~ 6479033 (-) False G422250
TU484956 other downstream 261184 6477451 ~ 6479033 (-) False G422250
TU484957 other downstream 261184 6477451 ~ 6479033 (-) False G422250
TU484958 other downstream 261184 6477451 ~ 6479033 (-) True G422250
TU485601 other upstream 847113 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 2079177 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2785310 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2953700 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 3370400 10153446 ~ 10164330 (-) False G424458

Expression Profile