Item | Value |
---|---|
RNA id | TU485117 |
length | 1056 |
RNA type | TUCP |
GC content | 0.48 |
exon number | 8 |
gene id | G422378 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 6744679 ~ 6783046 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU485111 | lncRNA | downstream | 57512 | 6686928 ~ 6687167 (-) | True | G422373 |
TU485092 | lncRNA | downstream | 107231 | 6637226 ~ 6637448 (-) | True | G422359 |
TU485090 | lncRNA | downstream | 108539 | 6635833 ~ 6636140 (-) | True | G422357 |
TU485086 | lncRNA | downstream | 110893 | 6631651 ~ 6633786 (-) | False | G422355 |
TU485084 | lncRNA | downstream | 110944 | 6631651 ~ 6633735 (-) | False | G422355 |
TU485166 | lncRNA | upstream | 124339 | 6907385 ~ 6970870 (-) | True | G422420 |
TU485175 | lncRNA | upstream | 188985 | 6972031 ~ 6972231 (-) | True | G422429 |
TU485182 | lncRNA | upstream | 199042 | 6982088 ~ 6983628 (-) | True | G422436 |
TU485183 | lncRNA | upstream | 200649 | 6983695 ~ 6983943 (-) | True | G422437 |
TU485185 | lncRNA | upstream | 203823 | 6986869 ~ 7024587 (-) | False | G422439 |
CI01000304_06738434_06742551.mRNA | mRNA | downstream | 2128 | 6738254 ~ 6742551 (-) | True | CI01000304_06738434_06742551 |
CI01000304_06725873_06727044.mRNA | mRNA | downstream | 17635 | 6725699 ~ 6727044 (-) | True | CI01000304_06725873_06727044 |
CI01000304_06706476_06715064.mRNA | mRNA | downstream | 29615 | 6706070 ~ 6715064 (-) | True | CI01000304_06706476_06715064 |
CI01000304_06659869_06667425.mRNA | mRNA | downstream | 77180 | 6659824 ~ 6667499 (-) | True | CI01000304_06659869_06667425 |
CI01000304_06515961_06519125.mRNA | mRNA | downstream | 225554 | 6515896 ~ 6519125 (-) | True | CI01000304_06515961_06519125 |
CI01000304_06867535_06870134.mRNA | mRNA | upstream | 84071 | 6867117 ~ 6870134 (-) | True | CI01000304_06867535_06870134 |
CI01000304_06881372_06883185.mRNA | mRNA | upstream | 98008 | 6881054 ~ 6883185 (-) | True | CI01000304_06881372_06883185 |
CI01000304_06914589_06924928.mRNA | mRNA | upstream | 130784 | 6913830 ~ 6925152 (-) | True | CI01000304_06914589_06924928 |
CI01000304_06931421_06933921.mRNA | mRNA | upstream | 147692 | 6930738 ~ 6934059 (-) | True | CI01000304_06931421_06933921 |
CI01000304_06935639_06967113.mRNA | mRNA | upstream | 152482 | 6935528 ~ 6969054 (-) | True | CI01000304_06935639_06967113 |
TU485082 | other | downstream | 113180 | 6631086 ~ 6631499 (-) | True | G422354 |
TU484955 | other | downstream | 261184 | 6477451 ~ 6479033 (-) | False | G422250 |
TU484956 | other | downstream | 261184 | 6477451 ~ 6479033 (-) | False | G422250 |
TU484957 | other | downstream | 261184 | 6477451 ~ 6479033 (-) | False | G422250 |
TU484958 | other | downstream | 261184 | 6477451 ~ 6479033 (-) | True | G422250 |
TU485601 | other | upstream | 847113 | 7630159 ~ 7652703 (-) | True | G422810 |
TU486232 | other | upstream | 2079177 | 8862223 ~ 8865296 (-) | True | G423386 |
TU487066 | other | upstream | 2785310 | 9568356 ~ 9569034 (-) | True | CI01000304_09566730_09575706 |
TU487077 | other | upstream | 2953700 | 9739353 ~ 9739471 (-) | True | G424168 |
TU487428 | other | upstream | 3370400 | 10153446 ~ 10164330 (-) | False | G424458 |