RNA id: TCONS_00021926


Basic Information

Item Value
RNA id TCONS_00021926
length 2012
lncRNA type intronic
GC content 0.36
exon number 1
gene id XLOC_009872
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22575143 ~ 22579326 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaaacgtAACAGaataatactgccaaaataatacagctgagaacaaataatagatttaaaagaccgaAAACTGGCCGTTAGATatacacaaaatgtattaaatattgtgttttaactACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTAGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCATTCACTGAAGCACATTGTCAAAAAAGCGCTGTCTTTGTATataaactgccgattcgagtttaaaacaactacattctcgcctgaaataCTCTTAAAACTACATTTTGCGACACATTGgatgatatttttttaaacttgcagGTCTGCACAGCAGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTCTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAAACTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACTTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGTaagtttaatgttaaataactTATTGTAAATATCCGTTGGGTCATATTCAATTCATATTTGACGTTACTTTGCCTTGTGTATGTAGTTAAGATTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACcagaaattaaaatatgattttcacATAACCTGGCCATGAGACAGAGCTCAAAACACTGACAAAACAGCGGTGAAACATTCAGAGAAACAGTTCAAACACATTTCGTTTTGTTTGGATAACGTTAATGTTGTTAAGCCTTTATTGCATACCTTATTTATAAACTCAGAATTTCCTTAGTGTTGGGAAGCTAACGTTCATGCTAACGTTCATGTTTACTCCGGAAAGGAGTGAAGTGAATGCCTTCAtgtctgaaacaatataactttaGTTTATGCATATCTCGACCCACGTCCATTTATAGCAGTTGTATTTTGCAacgttacatatttaaataacgtTATAAATGCATGTCCAAGAGAGTCATAATCATCTGTCTTGTCAGATCGAGGTGCGGGTCATTAATCAAACCTTTAAGTTgctaatttaaagcttttttttttttttgctgttaaaaaaGTTCACAccgatcatgatttttttttctttttagaagaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTcatctgtgtatatatatgtatatgtatgtgtgtgtgtgtgtatactttttCCCCAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAAACTGTTAGGTGAAGTGTTAAAGTTAAATTTGAATTGTTATGATTGTCATTATTTTGGACTTATATTTGATCCAATAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTAAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAATTACCCTTATCAGTGAGAtcacacattttaaatcagttctcagtttaaatgaaaagtttaatGTCAGTATAAGCCTAAGTGTAGGATTAAAtaactattataaatgttatgactattgtaaaaatattttaattttcaagCTTTGTGGTGAACACGTATGTGCATTCAAGCTTACAACTATTTGTACAGTGATAACTAAAGGGAAATGGCAACAAAGAATATTAGATAATGTTTTTAGTTAAAGTGAATCACTAATttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAgcttaattaagaaaaaaaagcatCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007507 heart development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021925 lncRNA upstream 246115 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00021924 lncRNA upstream 247641 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00021923 lncRNA upstream 461207 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00019695 lncRNA upstream 477460 22022291 ~ 22097683 (+) False XLOC_009868
TCONS_00019694 lncRNA upstream 477759 22022533 ~ 22097384 (+) False XLOC_009868
TCONS_00021927 lncRNA downstream 72709 22649863 ~ 22655087 (+) False XLOC_009874
TCONS_00021928 lncRNA downstream 118072 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019708 lncRNA downstream 295706 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00019712 lncRNA downstream 717532 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00021929 lncRNA downstream 1234447 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019696 mRNA upstream 213924 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019693 mRNA upstream 637099 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019692 mRNA upstream 637128 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019691 mRNA upstream 707271 21867161 ~ 21867872 (+) True XLOC_009865
TCONS_00019689 mRNA upstream 769169 21801277 ~ 21805974 (+) False XLOC_009864
TCONS_00019697 mRNA downstream 10507 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019698 mRNA downstream 10579 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019700 mRNA downstream 41466 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019699 mRNA downstream 41466 22618620 ~ 22678294 (+) False XLOC_009874
TCONS_00019701 mRNA downstream 72701 22649855 ~ 22673423 (+) False XLOC_009874
TCONS_00019682 other upstream 871464 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1661659 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 2070278 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 2270868 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 2404315 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 820647 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 1030077 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1260766 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 1383717 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 1938938 24516092 ~ 24517092 (+) False XLOC_009904

Expression Profile

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