RNA id: TU485185


Basic Information

Item Value
RNA id TU485185
length 467
lncRNA type read_through
GC content 0.38
exon number 2
gene id G422439
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6986869 ~ 7028505 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAACAATTCATTTGCCTAAAAGATTTAAGCATTTTTTGCAAAAAAACACCCTTGTTGCATTGCAATTAATACATTATATTATACACTTTGTGCAAAATCAGTCATAATCAACATTTTTTCTTCAGACTTCAGATCTCACACAGCCATTGTACATTTATTTGTTGACGCAAGGTTAACAATTCACAAGTCTGTCAATGTTAGAAAAATGTTGGTTGATAGAAACCCCTGGCCACTTACCCATATTCCCACAGCCAGAACCACCAGAAAATATATAGCAATCACAGAGATGTCCGCTGGATTGTTAATATGAACGGTGACATTTCTTCTATTCTCATTGCGGAGAAAAGAGAATCCAAAATAATCTGCCCCCATTTTGATGGTGTTTGAAGCAGGGCAAGTGTAGCACCACACTGTGTGTGACACGATGGTAAAGACACCTGGCTCAGACGTTCACTTGCAGGTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485183 lncRNA downstream 2926 6983695 ~ 6983943 (-) True G422437
TU485182 lncRNA downstream 3241 6982088 ~ 6983628 (-) True G422436
TU485175 lncRNA downstream 14638 6972031 ~ 6972231 (-) True G422429
TU485166 lncRNA downstream 15999 6907385 ~ 6970870 (-) True G422420
TU485111 lncRNA downstream 299702 6686928 ~ 6687167 (-) True G422373
TU485231 lncRNA upstream 87568 7112155 ~ 7112374 (-) True G422466
TU485233 lncRNA upstream 95144 7119731 ~ 7120017 (-) True G422468
TU485234 lncRNA upstream 97664 7122251 ~ 7122511 (-) True G422469
TU485238 lncRNA upstream 102825 7127412 ~ 7128023 (-) True G422473
TU485284 lncRNA upstream 252412 7276999 ~ 7277246 (-) True G422512
CI01000304_06935639_06967113.mRNA mRNA downstream 17815 6935528 ~ 6969054 (-) True CI01000304_06935639_06967113
CI01000304_06931421_06933921.mRNA mRNA downstream 52810 6930738 ~ 6934059 (-) True CI01000304_06931421_06933921
CI01000304_06914589_06924928.mRNA mRNA downstream 61717 6913830 ~ 6925152 (-) True CI01000304_06914589_06924928
CI01000304_06881372_06883185.mRNA mRNA downstream 103684 6881054 ~ 6883185 (-) True CI01000304_06881372_06883185
CI01000304_06867535_06870134.mRNA mRNA downstream 116735 6867117 ~ 6870134 (-) True CI01000304_06867535_06870134
CI01000304_07051182_07056250.mRNA mRNA upstream 26541 7051128 ~ 7056250 (-) True CI01000304_07051182_07056250
CI01000304_07065444_07081535.mRNA mRNA upstream 40632 7065219 ~ 7081970 (-) True CI01000304_07065444_07081535
CI01000304_07183432_07198305.mRNA mRNA upstream 158035 7182622 ~ 7198305 (-) True CI01000304_07183432_07198305
CI01000304_07203008_07211715.mRNA mRNA upstream 178377 7202964 ~ 7211715 (-) True CI01000304_07203008_07211715
CI01000304_07212382_07216898.mRNA mRNA upstream 187243 7211830 ~ 7216898 (-) True CI01000304_07212382_07216898
TU485117 other downstream 203823 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 355370 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 503374 6477451 ~ 6479033 (-) False G422250
TU485601 other upstream 605572 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 1837636 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2543769 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2712159 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 3128859 10153446 ~ 10164330 (-) False G424458

Expression Profile