RNA id: TU485238


Basic Information

Item Value
RNA id TU485238
length 612
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G422473
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7127412 ~ 7128023 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGATAAACTTATTTGGTTCAGATGGTGTCAAGCGTGTGTGGCGGCAACCAGGTGAGGAGTACAAAGACAAGTGTGTCTTGCCTACAGTCAAGCATGGTGGTGGGAGTGTCGTGGTCTGGGGCTGCATGAGTGCTGCCGGCACTGGGGAGCTACAGTTCATTGAGGGAACCATGAATGTCAACATGTACTGTGACATACTGAAGCAGAGCATGATCCCCTCCCTTCAGAGACTGGGCCGCAGGGCAGTATTCCAACATGATAACGACCCCAAACACACCTCCAAGACAACCACTGCCTTGCTAAAGAATGTCTCCAGACCTAAACCCTATTGAGCATCTGTGGGGCATCCTCAAATGGAAGGTGGAGGAGCGCAAGGTCTCTAACATCCACCAGCTCCGTGATGTCGTCATGGAGGAGTGGAAGAGGACTGCAGTGGCAACCTGTGAACTCCATGCCTAAGAGGGTTAAGGCAGTGCTGGAAAATAATGGTGGCCACACAAAATATTGACACTTTAGGCCCAATTTGGACATTTTCACTTAGGGGTGTACTCACTTTTGTGGCCAGCGGTTTAGACATTAATGGCTGTGTGTTGAGTTATGTTGAGGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485234 lncRNA downstream 4901 7122251 ~ 7122511 (-) True G422469
TU485233 lncRNA downstream 7395 7119731 ~ 7120017 (-) True G422468
TU485231 lncRNA downstream 15038 7112155 ~ 7112374 (-) True G422466
TU485191 lncRNA downstream 98907 7023380 ~ 7028505 (-) True G422439
TU485185 lncRNA downstream 102825 6986869 ~ 7024587 (-) False G422439
TU485284 lncRNA upstream 148976 7276999 ~ 7277246 (-) True G422512
TU485196 lncRNA upstream 194000 7322023 ~ 7325559 (-) False G422442
TU485201 lncRNA upstream 194378 7322401 ~ 7325559 (-) True G422442
TU485293 lncRNA upstream 210865 7338888 ~ 7340699 (-) True G422521
TU485300 lncRNA upstream 224641 7352664 ~ 7354386 (-) False G422528
CI01000304_07065444_07081535.mRNA mRNA downstream 45442 7065219 ~ 7081970 (-) True CI01000304_07065444_07081535
CI01000304_07051182_07056250.mRNA mRNA downstream 71162 7051128 ~ 7056250 (-) True CI01000304_07051182_07056250
CI01000304_06935639_06967113.mRNA mRNA downstream 158358 6935528 ~ 6969054 (-) True CI01000304_06935639_06967113
CI01000304_06931421_06933921.mRNA mRNA downstream 193353 6930738 ~ 6934059 (-) True CI01000304_06931421_06933921
CI01000304_06914589_06924928.mRNA mRNA downstream 202260 6913830 ~ 6925152 (-) True CI01000304_06914589_06924928
CI01000304_07183432_07198305.mRNA mRNA upstream 54599 7182622 ~ 7198305 (-) True CI01000304_07183432_07198305
CI01000304_07203008_07211715.mRNA mRNA upstream 74941 7202964 ~ 7211715 (-) True CI01000304_07203008_07211715
CI01000304_07212382_07216898.mRNA mRNA upstream 83807 7211830 ~ 7216898 (-) True CI01000304_07212382_07216898
CI01000304_07218265_07232779.mRNA mRNA upstream 90197 7218220 ~ 7232779 (-) True CI01000304_07218265_07232779
CI01000304_07282197_07285838.mRNA mRNA upstream 153458 7281481 ~ 7285838 (-) True CI01000304_07282197_07285838
TU485117 other downstream 344366 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 495913 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 643917 6477451 ~ 6479033 (-) False G422250
TU485601 other upstream 502136 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 1734200 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2440333 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2608723 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 3025423 10153446 ~ 10164330 (-) False G424458

Expression Profile