RNA id: TU483938


Basic Information

Item Value
RNA id TU483938
length 240
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G421365
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7128493 ~ 7128732 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGAATTGTAGTTTGCGAGTAAAGCTGCAAATTCCTCCATTAACGTCAGCTGCCTTCGTAATAATCCTCTGATACGTGCTTTTGAAAATCGCTGCATGGCATAAATTATAAATAGCCTATATTAGGCAGTATCTTAGCGAAAGTGCATTTCTTCCTGTTTTCTTCCATTCAAAAAGTTGCATCGTATAAGACGTAAGCGTGCTCCGGCCTGGAACGTTAAGTGCAAGTGTGAGTGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483935 lncRNA upstream 1621 7126593 ~ 7126872 (+) True G421362
TU483928 lncRNA upstream 8452 7119810 ~ 7120041 (+) True G421358
TU483880 lncRNA upstream 30985 7080425 ~ 7097508 (+) True G421310
TU483868 lncRNA upstream 144677 6983549 ~ 6983816 (+) True G421300
TU483865 lncRNA upstream 156272 6972018 ~ 6972221 (+) True G421297
TU483881 lncRNA downstream 46749 7175481 ~ 7177256 (+) True G421311
TU483874 lncRNA downstream 53912 7182644 ~ 7186187 (+) True G421305
TU483942 lncRNA downstream 74228 7202960 ~ 7203215 (+) True G421369
TU483962 lncRNA downstream 148202 7276934 ~ 7277262 (+) True G421383
TU483963 lncRNA downstream 148898 7277630 ~ 7277888 (+) True G421384
CI01000304_07024195_07048285.mRNA mRNA upstream 80208 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_06986969_07013827.mRNA mRNA upstream 112659 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 249185 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_06864719_06866382.mRNA mRNA upstream 262048 6864719 ~ 6866445 (+) True CI01000304_06864719_06866382
CI01000304_06844730_06857162.mRNA mRNA upstream 271260 6843662 ~ 6857233 (+) True CI01000304_06844730_06857162
CI01000304_07154005_07160649.mRNA mRNA downstream 25273 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07236677_07272874.mRNA mRNA downstream 107413 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07288867_07299197.mRNA mRNA downstream 160135 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 184965 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07334198_07342123.mRNA mRNA downstream 205330 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
TU483706 other upstream 885496 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 1951702 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2824661 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5034815 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6253244 872670 ~ 875249 (+) True G418116
TU483945 other downstream 223917 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 355409 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 849896 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 1103262 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1543038 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile