RNA id: TU483942


Basic Information

Item Value
RNA id TU483942
length 256
lncRNA type antisense_over
GC content 0.40
exon number 1
gene id G421369
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7202960 ~ 7203215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTTTTATTGGTCAGCTTCTGATTTGACTACATGACTTATTCTGGCACTAAAGCTTGGTAGATATGGTGGTCTGGATATCGTTGATGTGTATTGAGCTCAGTTTGGACTGTAGTGAGTGTCTGCGTTTCTGGTGCATTCTCTTAAAGTCTTCTGTGATCTCCAGAACAGTTTTATTCTTTGTCTCAGGCACGTGGAACCACACAAAAACACCAGAGAGGAAGCAGAACACAAAAAATATGAGGAAGCAGAAATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483874 lncRNA upstream 16773 7182644 ~ 7186187 (+) True G421305
TU483881 lncRNA upstream 25704 7175481 ~ 7177256 (+) True G421311
TU483938 lncRNA upstream 74228 7128493 ~ 7128732 (+) True G421365
TU483935 lncRNA upstream 76088 7126593 ~ 7126872 (+) True G421362
TU483928 lncRNA upstream 82919 7119810 ~ 7120041 (+) True G421358
TU483962 lncRNA downstream 73719 7276934 ~ 7277262 (+) True G421383
TU483963 lncRNA downstream 74415 7277630 ~ 7277888 (+) True G421384
TU483971 lncRNA downstream 77682 7280897 ~ 7283130 (+) False G421387
TU483972 lncRNA downstream 77682 7280897 ~ 7283130 (+) True G421387
TU483969 lncRNA downstream 79991 7283206 ~ 7465770 (+) True G421386
CI01000304_07154005_07160649.mRNA mRNA upstream 41835 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07024195_07048285.mRNA mRNA upstream 154675 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_06986969_07013827.mRNA mRNA upstream 187126 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 323652 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_06864719_06866382.mRNA mRNA upstream 336515 6864719 ~ 6866445 (+) True CI01000304_06864719_06866382
CI01000304_07236677_07272874.mRNA mRNA downstream 32930 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07288867_07299197.mRNA mRNA downstream 85652 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 110482 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07334198_07342123.mRNA mRNA downstream 130847 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07352697_07354032.mRNA mRNA downstream 149406 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
TU483706 other upstream 959963 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2026169 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2899128 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5109282 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6327711 872670 ~ 875249 (+) True G418116
TU483945 other downstream 149434 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 280926 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 775413 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 1028779 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1468555 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile