RNA id: TU483962


Basic Information

Item Value
RNA id TU483962
length 329
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G421383
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7276934 ~ 7277262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAAACTCGCGTTTAATAACTTAGACTTTTTTTCTCATTCCACTGCCTGCGTCTCATTTTATATAACGCAATAACGCATTTCTGAATGAACAGCCAGAATAGTGATGTTTTCTACGTTCACAGAGCGTCACATGAGAGCGGTTAATCAGGCGCGCCGGCGCCATCATGAGGTCGGATCGTTTTCTTCTCCTAATGCGGTTTTCATTGCTGTATTGTCAACATGTCTAATTGTAACGCTTGCTAACATTTTTATTCAAAATCAAGATTTCTCGATTTAAAAAATAATAAAATCGAGGCAAAACATTAAATTCGAATTAATCGAAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483942 lncRNA upstream 73719 7202960 ~ 7203215 (+) True G421369
TU483874 lncRNA upstream 90747 7182644 ~ 7186187 (+) True G421305
TU483881 lncRNA upstream 99678 7175481 ~ 7177256 (+) True G421311
TU483938 lncRNA upstream 148202 7128493 ~ 7128732 (+) True G421365
TU483935 lncRNA upstream 150062 7126593 ~ 7126872 (+) True G421362
TU483963 lncRNA downstream 368 7277630 ~ 7277888 (+) True G421384
TU483971 lncRNA downstream 3635 7280897 ~ 7283130 (+) False G421387
TU483972 lncRNA downstream 3635 7280897 ~ 7283130 (+) True G421387
TU483969 lncRNA downstream 5944 7283206 ~ 7465770 (+) True G421386
TU483984 lncRNA downstream 90401 7367663 ~ 7368814 (+) True G421399
CI01000304_07236677_07272874.mRNA mRNA upstream 3974 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07154005_07160649.mRNA mRNA upstream 115809 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07024195_07048285.mRNA mRNA upstream 228649 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_06986969_07013827.mRNA mRNA upstream 261100 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 397626 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_07288867_07299197.mRNA mRNA downstream 11605 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 36435 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07334198_07342123.mRNA mRNA downstream 56800 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07352697_07354032.mRNA mRNA downstream 75359 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07409324_07425656.mRNA mRNA downstream 130458 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
TU483706 other upstream 1033937 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2100143 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2973102 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5183256 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6401685 872670 ~ 875249 (+) True G418116
TU483945 other downstream 75387 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 206879 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 701366 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 954732 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1394508 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile