RNA id: TU485284


Basic Information

Item Value
RNA id TU485284
length 248
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G422512
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7276999 ~ 7277246 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAATTTAATGTTTTGCCTCGATTTTATTATTTTTTAAATCGAGAAATCTTGATTTTGAATAAAAATGTTAGCAAGCGTTACAATTAGACATGTTGACAATACAGCAATGAAAACCGCATTAGGAGAAGAAAACGATCCGACCTCATGATGGCGCCGGCGCGCCTGATTAACCGCTCTCATGTGACGCTCTGTGAACGTAGAAAACATCACTATTCTGGCTGTTCATTCAGAAATGCGTTATTGCGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485238 lncRNA downstream 148976 7127412 ~ 7128023 (-) True G422473
TU485234 lncRNA downstream 154488 7122251 ~ 7122511 (-) True G422469
TU485233 lncRNA downstream 156982 7119731 ~ 7120017 (-) True G422468
TU485231 lncRNA downstream 164625 7112155 ~ 7112374 (-) True G422466
TU485191 lncRNA downstream 248494 7023380 ~ 7028505 (-) True G422439
TU485196 lncRNA upstream 44777 7322023 ~ 7325559 (-) False G422442
TU485201 lncRNA upstream 45155 7322401 ~ 7325559 (-) True G422442
TU485293 lncRNA upstream 61642 7338888 ~ 7340699 (-) True G422521
TU485300 lncRNA upstream 75418 7352664 ~ 7354386 (-) False G422528
TU485301 lncRNA upstream 75418 7352664 ~ 7354386 (-) True G422528
CI01000304_07218265_07232779.mRNA mRNA downstream 44220 7218220 ~ 7232779 (-) True CI01000304_07218265_07232779
CI01000304_07212382_07216898.mRNA mRNA downstream 60101 7211830 ~ 7216898 (-) True CI01000304_07212382_07216898
CI01000304_07203008_07211715.mRNA mRNA downstream 65284 7202964 ~ 7211715 (-) True CI01000304_07203008_07211715
CI01000304_07183432_07198305.mRNA mRNA downstream 78694 7182622 ~ 7198305 (-) True CI01000304_07183432_07198305
CI01000304_07065444_07081535.mRNA mRNA downstream 195029 7065219 ~ 7081970 (-) True CI01000304_07065444_07081535
CI01000304_07282197_07285838.mRNA mRNA upstream 4235 7281481 ~ 7285838 (-) True CI01000304_07282197_07285838
CI01000304_07303509_07309222.mRNA mRNA upstream 25578 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_07325899_07328203.mRNA mRNA upstream 48402 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07464639_07466430.mRNA mRNA upstream 186989 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07612069_07709665.mRNA mRNA upstream 334823 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
TU485117 other downstream 493953 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 645500 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 793504 6477451 ~ 6479033 (-) False G422250
TU485601 other upstream 352913 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 1584977 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2291110 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2459500 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2876200 10153446 ~ 10164330 (-) False G424458

Expression Profile