RNA id: TU483971



Basic Information


Item Value
RNA id TU483971
length 2017
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G421387
representative False

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7280897 ~ 7283130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGATTATCGATTTTTTTTTTTTTCTGGAAACTGATTATTTTCAGGATTCTTTGATGAGTAGAAAGCTTAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGTAACATTATTACATGTCTTTACTGTCACTTTTTAACAATTTCATGCATCCTTATAAAAGTATTAAAAAAGTACCATGGCAAAAATATAAAAACAAAATATATAAATAAAAAATACATATACTGGTTTATGTAATTTAATTTAAAATTTATGCTCACAATTTATACTTACACAATATAAATAGGTCTTTATTTGTCGATTTATGCTTATATATTTTAGGAAGGGGGTTAAGAAATCATCACATTTGAGAAAAAAAAAACCTGTTCTAAATTATTTAAAGCAGAAGATGATAGGCTGTAGAACCCGTTTGTGGCCATAGCTACTTGCTCTGTAAACATGAGGAACATCTAAGATCCAAGACTGACAATTGTTGAAGAAACATTTTCCATAAAATGCAAAATTGCATACAGCTGATTTCAAACTGAAATATTTGAAAGCAGATTTTCTCATGCTCTTATTTAAAATGTCTGGCATAACTTGCCTTTATTTACAACAAAACAAAAGCTTTGACTTCAGTAGGGGTGTGTACATTCTTGTTTCATAACATCATAATAGGGTGAAGCAGTAGTTTAGGTGGATCTTGCATATGGTTGTGCAACCAAGAGCTCTAAGTTCCCATCAAACAAGTTTCAGTCACTCCTTATGATTTCTGATGATCCAACAGCCTTCGCATTTTACACACAAAAGAATTAAATAGCTCTTTTTGTTTTGACAGTTCCTGCAGTTTTTTTTTTCCTGCAGTATAAGATAAATCATGCAACAAAAAAAAACCTCATGCAAAAGTTCATGGAAAGCAGTTTCTTTTTAATGAGAGACTTCAAAATAAATACATAATTATATATACATATATACAAAGGATTATTTTATGCTTCACCTTTACATATCAATTTACCTCTTCAGACACAGGAAAGGCAGGTGACAATAGGGAGAGAGTCCCGTGAAACTTCTATTGTATTATTAAGTGTAATGTGCAAATTAAAACCAATTCAAACTTATATAAAAGTATCATAGTAAACATTCACATTTCACTTCAGCAGCATGTGCAAACTAGCAAGCACTGAACAAGATAGTCCATTCAAGTAAGGGATATGTACAACACTGGGGTGCAAAAAGTCATTTTTGCACTTCGTTGAATCCGCAATTAAATCTAATAGAGATCAAGTAGAAATGTGGACGGCACATGTGTCTCAGTCCCATCTTAACTCAACGGAGCAACATTTGCCATTCTTCCCCAGGTCCTGAGTACCAGACGGTCCGGGTAATGTGGGCCTTTGCATGGCAAGTTTTTCATCTTCTGTAGATCATGACTTTTGACCCCGGGCCATGCAGAAAGACGCTGAGGACTTCGTATAATGAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCCGCCTGCTTGGTGTCACTAGCCAAGGTTCTGGTGCCACGTTTTCCACAAAGTTCTGCCTGCTTGGTGTCACTAGCTGAGGTTCCGGTGCCACGTTTTCCACATAAATCTGGTAGTTTTTACCTTTGTTATTGTCTACAAGTTTCAAATGGCTATTGCCGGGTCGGAACACCATTAAGAATTCTACGTGCTCCTTTGGGTCCAGCTCAGATGGTAGAGACACATTAAAAGCAAACAAGTCGGTCTCCAAAGTTGCATGTGGTTCCCTCACATAAGTGCATGCAATTTCTTTGTGGCTTCGCCATGAGTCAAAAGTTATGTGGACAACGACAGTCTTGTCGAACTTAATGTTGCAGACCCGTACAGTTCCGCTCAACACCCTTTCGGTCAAGCTACAGCTCTCCAACTGCACTAAGGTTTCCTTCAAGCTTGCACGGTCTGCAATAGGCTGTGGAAAACCAAGCTTCAGTCGCAGTCTCGCACTCTGCATGGGTGCTCTAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU483963 lncRNA upstream 3009 7277630 ~ 7277888 (+) True G421384
TU483962 lncRNA upstream 3635 7276934 ~ 7277262 (+) True G421383
TU483942 lncRNA upstream 77682 7202960 ~ 7203215 (+) True G421369
TU483874 lncRNA upstream 94710 7182644 ~ 7186187 (+) True G421305
TU483881 lncRNA upstream 103641 7175481 ~ 7177256 (+) True G421311
TU483969 lncRNA downstream 76 7283206 ~ 7465770 (+) True G421386
TU483984 lncRNA downstream 84533 7367663 ~ 7368814 (+) True G421399
TU484020 lncRNA downstream 200345 7483475 ~ 7483688 (+) True G421434
TU484022 lncRNA downstream 201623 7484753 ~ 7484961 (+) True G421436
TU484027 lncRNA downstream 207958 7491088 ~ 7491301 (+) True G421440
CI01000304_07236677_07272874.mRNA mRNA upstream 7937 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07154005_07160649.mRNA mRNA upstream 119772 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07024195_07048285.mRNA mRNA upstream 232612 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_06986969_07013827.mRNA mRNA upstream 265063 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 401589 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_07288867_07299197.mRNA mRNA downstream 5737 7288867 ~ 7299754 (+) True CI01000304_07288867_07299197
CI01000304_07314354_07323703.mRNA mRNA downstream 30567 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07334198_07342123.mRNA mRNA downstream 50932 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07352697_07354032.mRNA mRNA downstream 69491 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07409324_07425656.mRNA mRNA downstream 124590 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
TU483706 other upstream 1037900 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2104106 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2977065 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5187219 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6405648 872670 ~ 875249 (+) True G418116
TU483945 other downstream 69519 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU484021 other downstream 201011 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 695498 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 948864 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1388640 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203

Expression Profile