RNA id: TU483969


Basic Information

Item Value
RNA id TU483969
length 283
lncRNA type read_through
GC content 0.53
exon number 2
gene id G421386
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7283206 ~ 7465770 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAAGAGCGAGACCTTTAGCATCAGCAAATACAACTTGCTTCTTGCGTAGTGTGCCGCGGCCAGGAGAGTATGAGGACAGGGAGCTGCTAGAACTGGAGGAAGACCGTGAAGATGATGGGGAAGGAGGTGAAAGTCTTGCTCTTTGAAGCTCCGGTGAGGATATGTTGGATGAAGAGGACCTGAGAGCGGACATGCCAAGGAGCTGAGACACCGGTGGGCTAACCTGCGCATGCATGGCCAATTCCACTGGCATCACATGCTCAGGGAAAGAGTAACTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483971 lncRNA upstream 76 7280897 ~ 7283130 (+) False G421387
TU483972 lncRNA upstream 76 7280897 ~ 7283130 (+) True G421387
TU483963 lncRNA upstream 5318 7277630 ~ 7277888 (+) True G421384
TU483962 lncRNA upstream 5944 7276934 ~ 7277262 (+) True G421383
TU483942 lncRNA upstream 79991 7202960 ~ 7203215 (+) True G421369
TU484020 lncRNA downstream 17705 7483475 ~ 7483688 (+) True G421434
TU484022 lncRNA downstream 18983 7484753 ~ 7484961 (+) True G421436
TU484027 lncRNA downstream 25318 7491088 ~ 7491301 (+) True G421440
TU484030 lncRNA downstream 30260 7496030 ~ 7496396 (+) True G421443
TU484033 lncRNA downstream 33713 7499483 ~ 7500085 (+) True G421446
CI01000304_07236677_07272874.mRNA mRNA upstream 10246 7236145 ~ 7272960 (+) True CI01000304_07236677_07272874
CI01000304_07154005_07160649.mRNA mRNA upstream 122081 7154005 ~ 7161125 (+) True CI01000304_07154005_07160649
CI01000304_07024195_07048285.mRNA mRNA upstream 234921 7024195 ~ 7048285 (+) True CI01000304_07024195_07048285
CI01000304_06986969_07013827.mRNA mRNA upstream 267372 6986828 ~ 7015834 (+) True CI01000304_06986969_07013827
CI01000304_06875225_06878962.mRNA mRNA upstream 403898 6873700 ~ 6879308 (+) True CI01000304_06875225_06878962
CI01000304_07890347_07902088.mRNA mRNA downstream 424577 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 443728 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 462020 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 513308 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 523132 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU483706 other upstream 1040209 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2106415 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 2979374 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5189528 2092494 ~ 2093678 (+) True G418981
TU480282 other upstream 6407957 872670 ~ 875249 (+) True G418116
TU484021 other downstream 18371 7484141 ~ 7484688 (+) True G421435
TU485573 other downstream 512858 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 766224 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1206000 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1483266 8949036 ~ 8949422 (+) True G423614

Expression Profile