RNA id: TU485293


Basic Information

Item Value
RNA id TU485293
length 1721
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G422521
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7338888 ~ 7340699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAAGGTGTTGAGGGTCACCAATGAGGCAGGAAGTACAGTGCCTGTGTGACCTTGAGGAAAACCCACAAATGCAGCACCCCATTGAATGGAGGGAAAGGTTGGGAGGTGTCCCGTAGCATGGAAAAACTGGGCAGCCGCCAGAGACCATGAAACCACTGGAGCCCATGGCACACTGAAACCATTGGAGTGTTTGTGCAGGCTGGAGAGAGTGGTGCTACATGCGTGGATGTGCAGCATAGCTGCGGCCTCCAGCAGGAGAAGCAGGAAGGCAAGGGCCATTCCCTCTGGATGGAGTAGCAGAAGCGCCAACCCCAGGAGTCCGCACAGCAGGATCAAGGGCGCCGAGTACACTGTACCGAGCCCGTAAGCCTCCACGGCTGGCCTGCTGTCTGCTTCGCCACCTTCCGTGACCCCGTCCTCCAGCGAGTGTCGGATACGCTGATACAGCTGTGGTATAAGGTGGTGCAGTTCAGCCTGTGGACTGATTCCCGTGCTGGCTCGGTACTTGGGGGGTGGCAGGGATGTTCCTCGAGAGTTCAACGGAGTCCTTGACTTGAGGAACACAGTCATGGGATCCACCCACAACAGGAGCAATCCCAGGCTCAGTAGGAAGAAAGTGGTCCGCGGCAGGAACACCTGGGCTAGGCCGATTAGCTCAGACAAATTCCGGAAGGTGTCCTCTGGGGTGGCGCTCACTGCCCAATGCAACCCCATGCAAACACAGGCCAGTGGTAAAAGGAAGCAGGCCGAAAACACAGTCGCACTGGAACAGTTAAGGTTCCCGTAGTGTCTGAGCCAACGATGTAAAAGATACCCCCACATGGCCAATGAGACCACAGAGAGGACATAGTGGAGGTTACGCAGTTGGCTGTCCTGTACACGTGAAAGCGGGGAGAGGAAAGGTGAGGGCTGGCAGGTGCCCTGCTCCTCTCGGCAATTGTGGAGTGAGAGGGATAGGTAAAGTGATCCAACCATTACTCCCAACCACACCAGCAAGATGGTGGCCTCCCGTCTAACAACTGAGGACGGCAGCGCTGTTGGGAGCAGCCGAGGTGGCTTCTGGGTGTCTGGTGGAGGAAGCGGGACCAGGAATCCATTCCAGTTGAGACGGAGAGGAACATATACGCTCAACGTCAAGAGCAAGAAGGTAACCACGTGGCCCTCGTAGATGACGTAGCTGTCAGAGAGTAGCGAGGCACAGCGCAGGAAAAGCACCAGCAGGGCTGGCGTGAGGAGGCCAGAAGCTGACCACCTACCTCTTGGAGAAACTCCACGAGTCCTCCATAGAAACAAAACCTCAGAAGAAAGTGATGCAGCTCCCAAACACCACGAAAGCTCCAAATAACCTTGTGTGAACAGCTGACCTGCAGCTACTACTAGTCCTACGACCAGCCCTGAAAGTATGGGCAACTTCAGCAGGCCCTCCTGAATTACTACATGAGACAACTCGGAAATGACGTAGCACAGCACACAGGAAACCCCTAAGATTAAGAGCCCAGCAGCCATTTTGAAAGGGTTGAAACGGGCCCAGGAGGCTCTACAAGTCTCCCTGACAGCTGTCAGATAGTTCTGCATGGAGACGACTAACTCAAGAGAGGGAACATGACCCTTGTGGACAGCGGCCAAGTACTGGGAGGAAATGTTTGAGAAGTCAGCCCGCAGTTGAGACAGACTGTCTGGTGGGATGTCTTTGGCCATGTTAGAGTAGGTCTCCAAGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485196 lncRNA downstream 13329 7322023 ~ 7325559 (-) False G422442
TU485201 lncRNA downstream 13329 7322401 ~ 7325559 (-) True G422442
TU485284 lncRNA downstream 61642 7276999 ~ 7277246 (-) True G422512
TU485238 lncRNA downstream 210865 7127412 ~ 7128023 (-) True G422473
TU485234 lncRNA downstream 216377 7122251 ~ 7122511 (-) True G422469
TU485300 lncRNA upstream 11965 7352664 ~ 7354386 (-) False G422528
TU485301 lncRNA upstream 11965 7352664 ~ 7354386 (-) True G422528
TU485309 lncRNA upstream 27189 7367888 ~ 7368822 (-) False G422536
TU485311 lncRNA upstream 27189 7367888 ~ 7368822 (-) True G422536
TU485346 lncRNA upstream 70657 7411356 ~ 7440582 (-) True G422564
CI01000304_07325899_07328203.mRNA mRNA downstream 10685 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 27177 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_07282197_07285838.mRNA mRNA downstream 53050 7281481 ~ 7285838 (-) True CI01000304_07282197_07285838
CI01000304_07218265_07232779.mRNA mRNA downstream 106109 7218220 ~ 7232779 (-) True CI01000304_07218265_07232779
CI01000304_07212382_07216898.mRNA mRNA downstream 121990 7211830 ~ 7216898 (-) True CI01000304_07212382_07216898
CI01000304_07464639_07466430.mRNA mRNA upstream 123536 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07612069_07709665.mRNA mRNA upstream 271370 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07961608_07968820.mRNA mRNA upstream 620866 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_08165245_08217042.mRNA mRNA upstream 824498 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 876935 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
TU485117 other downstream 555842 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 707389 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 855393 6477451 ~ 6479033 (-) False G422250
TU485601 other upstream 289460 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 1521524 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2227657 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2396047 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2812747 10153446 ~ 10164330 (-) False G424458

Expression Profile