Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU483984 |
| length | 576 |
| lncRNA type | inter_gene |
| GC content | 0.30 |
| exon number | 3 |
| gene id | G421399 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 7367663 ~ 7368814 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU483971 | lncRNA | upstream | 84533 | 7280897 ~ 7283130 (+) | False | G421387 |
| TU483972 | lncRNA | upstream | 84533 | 7280897 ~ 7283130 (+) | True | G421387 |
| TU483963 | lncRNA | upstream | 89775 | 7277630 ~ 7277888 (+) | True | G421384 |
| TU483962 | lncRNA | upstream | 90401 | 7276934 ~ 7277262 (+) | True | G421383 |
| TU483942 | lncRNA | upstream | 164448 | 7202960 ~ 7203215 (+) | True | G421369 |
| TU484020 | lncRNA | downstream | 114661 | 7483475 ~ 7483688 (+) | True | G421434 |
| TU484022 | lncRNA | downstream | 115939 | 7484753 ~ 7484961 (+) | True | G421436 |
| TU484027 | lncRNA | downstream | 122274 | 7491088 ~ 7491301 (+) | True | G421440 |
| TU484030 | lncRNA | downstream | 127216 | 7496030 ~ 7496396 (+) | True | G421443 |
| TU484033 | lncRNA | downstream | 130669 | 7499483 ~ 7500085 (+) | True | G421446 |
| CI01000304_07352697_07354032.mRNA | mRNA | upstream | 13267 | 7352621 ~ 7354396 (+) | False | CI01000304_07352697_07354032 |
| CI01000304_07334198_07342123.mRNA | mRNA | upstream | 25365 | 7334062 ~ 7342298 (+) | True | CI01000304_07334198_07342123 |
| CI01000304_07314354_07323703.mRNA | mRNA | upstream | 43045 | 7313697 ~ 7324618 (+) | True | CI01000304_07314354_07323703 |
| CI01000304_07288867_07299197.mRNA | mRNA | upstream | 67909 | 7288867 ~ 7299754 (+) | True | CI01000304_07288867_07299197 |
| CI01000304_07236677_07272874.mRNA | mRNA | upstream | 94703 | 7236145 ~ 7272960 (+) | True | CI01000304_07236677_07272874 |
| CI01000304_07409324_07425656.mRNA | mRNA | downstream | 38906 | 7407720 ~ 7426027 (+) | True | CI01000304_07409324_07425656 |
| CI01000304_07436662_07442126.mRNA | mRNA | downstream | 67848 | 7436662 ~ 7442692 (+) | True | CI01000304_07436662_07442126 |
| CI01000304_07890347_07902088.mRNA | mRNA | downstream | 521533 | 7890347 ~ 7902758 (+) | True | CI01000304_07890347_07902088 |
| CI01000304_07909498_07914625.mRNA | mRNA | downstream | 540684 | 7909498 ~ 7915942 (+) | True | CI01000304_07909498_07914625 |
| CI01000304_07927790_07957821.mRNA | mRNA | downstream | 558976 | 7927790 ~ 7958462 (+) | True | CI01000304_07927790_07957821 |
| TU483945 | other | upstream | 13331 | 7352649 ~ 7354332 (+) | True | CI01000304_07352697_07354032 |
| TU483706 | other | upstream | 1124666 | 6241233 ~ 6242997 (+) | True | G421162 |
| TU483012 | other | upstream | 2190872 | 5173223 ~ 5173339 (+) | True | G420524 |
| TU482914 | other | upstream | 3063831 | 4303336 ~ 4303832 (+) | True | G420445 |
| TU481280 | other | upstream | 5273985 | 2092494 ~ 2093678 (+) | True | G418981 |
| TU484021 | other | downstream | 115327 | 7484141 ~ 7484688 (+) | True | G421435 |
| TU485573 | other | downstream | 609814 | 7978628 ~ 7978814 (+) | True | G422786 |
| TU485809 | other | downstream | 863180 | 8234441 ~ 8234534 (+) | True | G423009 |
| TU486091 | other | downstream | 1302956 | 8671770 ~ 8672555 (+) | True | CI01000304_08671901_08672203 |
| TU486477 | other | downstream | 1580222 | 8949036 ~ 8949422 (+) | True | G423614 |
