RNA id: TU485346


Basic Information

Item Value
RNA id TU485346
length 3096
lncRNA type read_through
GC content 0.37
exon number 2
gene id G422564
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7411356 ~ 7440582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTCTTCACATTAAACTGAACTTTTTGGCGGTTTGTAATGAGTTTCTGTGAGTATGTGCAGTAGAAAAAACACAGATTGTGTCGACTTCATATTATTTAATAATGTGATTTAGTAATCACAGACACTAGTCCAAATATCACGATTTGAATTTTATTAAATGTAAAGCCCTACTTTTGATATATACATTCCTTGAAATTCCTTAAAGGTCACCTATTATGCTAAATCCACTTTTACAAGGCGTTTGGATATAAATGTGTTAGCAGTGTGTGAACACAACCACCCCACAATGATAAAAATCCACCCACTTTTTTTTAAAATCCCCATTAAATCGAAGCAGTCTAATTAGACAAGCCATTTTGATTCTCTGAGTAATGTGACGTCACATTACTCATGCCCCGCCCACGGCCGCTGATTGACAGTCCTGTATTACCATGGTTGTACGCTGTCCGCCATTTTCTCCACGGTAGAGCAGCTGTATTGACAACAATGTCTGGTAAGTAATTGAGATGTTTTGTTGTTGGATGTAAGAGTGAATATAACAATCTTCATTTACTGACATCTGAGCCGCTGAACGCAGTGGATTAGTTTTATTTTTGAAGGGAATGCGCCACAGATCTAATATGCACATACGATTTCTGTAACGTTGCCTGCTATTTACGTTCACAGACATAACTGGCTGTGTTTATGTGAACTGTGTGTTTTTGACAGAACCTTGTGTGTATTTGACAGTTTAAACAAAACAAAAAATGTGAAAGAGAAGTCACTCACGAGACTTGACGTCTGACAGCTGTGTGTGTGCGCTTCAGATAAGTGCGCTCAGCAAACAATCCATTAGAAGTTTAAACTGATATCGCTTTAAAACTCGTGGAAATAATAAACTTTAATGATGAAAGAAAAACTGCTATCCGTGAGAGTGATCGTGATATAGATGATAATCAAAACCAAGCAGATGTCTTGTTAATATTTGGCAGAGAATCCGATTGAGGCAGTAACTGTGATCGTAGAGAGGGGGCGGGGCACAAAAGCTCATTTGCATTTAAAGGCACATGCGCGAAAACAGCCTGTTCGCGACTGTAGTCAGAAATGGGTATTTACAACATGGATTTATAAAAGATCTGTGAGGTATTTTAAGCTGAAACTTCACAGACACATTCTGGGGACATCTGAGACTTAAATTACATCTTAAAAAATGGGCATAATAGGGGACCTTTAAATTTCAGTAAAAATGGAAATTATGACATTAATTCCGCAATTTTCAGTTTTTTCAGAGTTTTCAGCATAGCAGAGATCATAGGGCCTTAAATCAAATCAAATACTTTAGTAGAGAATGGTACTATGATGGTAATCTAATCTGTAATTTTTGCAGGCCTAATGCAAGGTATTTTGCAAATACTCACTGAGATGCCTGTGTCCTTATTGAGGATGACCTGTAGGAGATGAGGGGGCAGGATGGGGGGAGATTTGAATTTCTCTTCCTGTTTGGGGACATAAGAGTCCTGATGGTACGGCCCAGGAGGAGAGCTGGACAGATCTATAATCAATAAAGACAATGTGTCACAACAACCCATGACTGACCGTTTTGGTCATTTTCAGTTTTTTGTGATTAAACAGCGCTAAGATATGATGAAATGAAATGTGGAAATGGTTGTGTTCAAACCTGACATGTCAGAGCATTTCTGTGAATCCACCATGAGTGCATCAAACACCTCAAAGTCTGTCTTCTTCACCTGGATGATATTGTTGACCGTGCCGAGCTGGTTGGTCACCACAGGCTAAAGAGAAAAAAAAAAGGTCATTATGCTGGTTTTATAGTACTAATGGACGATGATGACTGATGTCTCTGTCACCTCTGTTGGGTCATGTGTCCACTGTCCATCCACGAAGAATTTATACTGGTGTTCACCCTCAGGCAAATCTACAATTGCCACAAAGTTGTTTTGACTATTAAAGAAACAGAGGTAAAAGAAAAATAATAATGTTAAATGAATGGATTTGAAGTTTATTCTAAAGAAGAAGACTTCTCCACTTGTTACGTACCAGTGTTACATTAGTATTATTTCTGTCATGACAACTCTCAGAGTGTTTGGCATTGTAATGGATATGACTATGTTGATGTTTGGTCTTGGTGGAATAGATCTGCTACGCTGCTGCTGCAGAACAAGTATGGGACTTGCTACTAACAATACATACAAAACACACTGCTGTGAGCAAGTCAGACATGCTGCTGCTGTACAAAATAGCATACATGAATTACCCGTAACAGATCTATACAGGTGGAGGGTTTCTGAATGCACACTGCAAGTGCTACAGTGAATGCTAACCAAGTATTTGAAGGTTGATAGAGCAGGAACTAATCAGCTGTGCCCTATCGAGAATATGTGATTGCAAGCTTATATGAATTATAAGGACCTATCAGTCTGTGCCATCTAGAGTTTCATGACAGAACTTTGTACTTATATATATTAATATTAGCTATATATTTTAATATTTAGTTTTAATTTTATATATTTATTTTTTTACTTTTTTAATAGTTATAGACAGGGCTTGACATTAACTTTTTTGCTCACCAGCCACTGTGGCTAGTGGTTTTTCCAAAGTTACTAGCCACTCAGCACTTTCACTGGCACAATTTTGCTGCAGGGAAATTACATTTTATATGATTAAAGTTGACTTTGGCATGCTTAAATTACTTGATTTTGAGTCATTTTACTTGATTTAAAACCCTTTCCAACTTTCAAATGCAGACTGATCACCCAAAGCAAGACTACATGGTATCAGCTGGTATGTACAGGTGGGCAAGGGGTGGGTAGTATGACCATAATATGAGAAATTTTATAAGTTATTTTTGTTAGGCTATATAAAAAGAACAAAGAAGCAAATTAGCAAATTACAAATACAATAGTAAATTTAAAAAAAAAAAAAAAAATTAATCTTACAGTTTCTCGGTAGACAATCATTCATAGACTTACATTGAATGATTGTCAATAAACGTTTAGAAATTCACACTCCAACCATCAAACTATTTAAATATAAACACACATAAGAATATGTTTATTCTGTTCTTATAATTACCTAGCAACGTCATAGCAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485309 lncRNA downstream 42534 7367888 ~ 7368822 (-) False G422536
TU485311 lncRNA downstream 42534 7367888 ~ 7368822 (-) True G422536
TU485300 lncRNA downstream 56970 7352664 ~ 7354386 (-) False G422528
TU485301 lncRNA downstream 56970 7352664 ~ 7354386 (-) True G422528
TU485293 lncRNA downstream 70657 7338888 ~ 7340699 (-) True G422521
TU485599 lncRNA upstream 162939 7603521 ~ 7607629 (-) True G422808
TU485631 lncRNA upstream 310689 7751271 ~ 7751647 (-) True G422840
TU485689 lncRNA upstream 393210 7833792 ~ 7834067 (-) True G422895
TU485635 lncRNA upstream 460891 7901473 ~ 7902763 (-) False G422843
TU485637 lncRNA upstream 460891 7901473 ~ 7902763 (-) True G422843
CI01000304_07325899_07328203.mRNA mRNA downstream 83153 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 99645 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_07282197_07285838.mRNA mRNA downstream 125518 7281481 ~ 7285838 (-) True CI01000304_07282197_07285838
CI01000304_07218265_07232779.mRNA mRNA downstream 178577 7218220 ~ 7232779 (-) True CI01000304_07218265_07232779
CI01000304_07212382_07216898.mRNA mRNA downstream 194458 7211830 ~ 7216898 (-) True CI01000304_07212382_07216898
CI01000304_07464639_07466430.mRNA mRNA upstream 23653 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07612069_07709665.mRNA mRNA upstream 171487 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07961608_07968820.mRNA mRNA upstream 520983 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_08165245_08217042.mRNA mRNA upstream 724615 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 777052 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
TU485117 other downstream 628310 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 779857 6631086 ~ 6631499 (-) True G422354
TU484956 other downstream 927861 6477451 ~ 6479033 (-) False G422250
TU485601 other upstream 189577 7630159 ~ 7652703 (-) True G422810
TU486232 other upstream 1421641 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 2127774 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 2296164 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2712864 10153446 ~ 10164330 (-) False G424458

Expression Profile