RNA id: TU484021



Basic Information


Item Value
RNA id TU484021
length 548
RNA type TUCP
GC content 0.45
exon number 1
gene id G421435
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7484141 ~ 7484688 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTGAAAAAAGAAGCCATATCTTAACATGATCCAGAAGCGCAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATTGATTGTGGCAAAGTGGAAAACTGTTCTGTGGTCAGATGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGGGCAGCTTACACATCTGGAAAGGCACCATCAATGCTAAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGACGTCGTCTCTTTCAGGGAAGATCTTGCATTTTCCAACATGACAATGCCAGACCACATACTGCATCAATTACAACATCATGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484020 lncRNA upstream 453 7483475 ~ 7483688 (+) True G421434
TU483969 lncRNA upstream 18371 7283206 ~ 7465770 (+) True G421386
TU483984 lncRNA upstream 115327 7367663 ~ 7368814 (+) True G421399
TU483971 lncRNA upstream 201011 7280897 ~ 7283130 (+) False G421387
TU483972 lncRNA upstream 201011 7280897 ~ 7283130 (+) True G421387
TU484022 lncRNA downstream 65 7484753 ~ 7484961 (+) True G421436
TU484027 lncRNA downstream 6400 7491088 ~ 7491301 (+) True G421440
TU484030 lncRNA downstream 11342 7496030 ~ 7496396 (+) True G421443
TU484033 lncRNA downstream 14795 7499483 ~ 7500085 (+) True G421446
TU484034 lncRNA downstream 16375 7501063 ~ 7501334 (+) True G421447
CI01000304_07436662_07442126.mRNA mRNA upstream 41449 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 58114 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 129745 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07334198_07342123.mRNA mRNA upstream 141843 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07314354_07323703.mRNA mRNA upstream 159523 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07890347_07902088.mRNA mRNA downstream 405659 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 424810 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 443102 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 494390 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 504214 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU483945 other upstream 129809 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1241144 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2307350 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3180309 4303336 ~ 4303832 (+) True G420445
TU481280 other upstream 5390463 2092494 ~ 2093678 (+) True G418981
TU485573 other downstream 493940 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 747306 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1187082 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1464348 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 2079917 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile