Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU484033 |
| length | 603 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G421446 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 7499483 ~ 7500085 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU484030 | lncRNA | upstream | 3087 | 7496030 ~ 7496396 (+) | True | G421443 |
| TU484027 | lncRNA | upstream | 8182 | 7491088 ~ 7491301 (+) | True | G421440 |
| TU484022 | lncRNA | upstream | 14522 | 7484753 ~ 7484961 (+) | True | G421436 |
| TU484020 | lncRNA | upstream | 15795 | 7483475 ~ 7483688 (+) | True | G421434 |
| TU483969 | lncRNA | upstream | 33713 | 7283206 ~ 7465770 (+) | True | G421386 |
| TU484034 | lncRNA | downstream | 978 | 7501063 ~ 7501334 (+) | True | G421447 |
| TU484035 | lncRNA | downstream | 1276 | 7501361 ~ 7501615 (+) | True | G421448 |
| TU484036 | lncRNA | downstream | 2637 | 7502722 ~ 7503033 (+) | True | G421449 |
| TU484037 | lncRNA | downstream | 4112 | 7504197 ~ 7504403 (+) | True | G421450 |
| TU484038 | lncRNA | downstream | 4406 | 7504491 ~ 7504735 (+) | True | G421451 |
| CI01000304_07436662_07442126.mRNA | mRNA | upstream | 56791 | 7436662 ~ 7442692 (+) | True | CI01000304_07436662_07442126 |
| CI01000304_07409324_07425656.mRNA | mRNA | upstream | 73456 | 7407720 ~ 7426027 (+) | True | CI01000304_07409324_07425656 |
| CI01000304_07352697_07354032.mRNA | mRNA | upstream | 145087 | 7352621 ~ 7354396 (+) | False | CI01000304_07352697_07354032 |
| CI01000304_07334198_07342123.mRNA | mRNA | upstream | 157185 | 7334062 ~ 7342298 (+) | True | CI01000304_07334198_07342123 |
| CI01000304_07314354_07323703.mRNA | mRNA | upstream | 174865 | 7313697 ~ 7324618 (+) | True | CI01000304_07314354_07323703 |
| CI01000304_07890347_07902088.mRNA | mRNA | downstream | 390262 | 7890347 ~ 7902758 (+) | True | CI01000304_07890347_07902088 |
| CI01000304_07909498_07914625.mRNA | mRNA | downstream | 409413 | 7909498 ~ 7915942 (+) | True | CI01000304_07909498_07914625 |
| CI01000304_07927790_07957821.mRNA | mRNA | downstream | 427705 | 7927790 ~ 7958462 (+) | True | CI01000304_07927790_07957821 |
| CI01000304_07979388_07979919.mRNA | mRNA | downstream | 478993 | 7979078 ~ 7980720 (+) | False | CI01000304_07979388_07979919 |
| CI01000304_07989774_08014921.mRNA | mRNA | downstream | 488817 | 7988902 ~ 8015304 (+) | True | CI01000304_07989774_08014921 |
| TU484021 | other | upstream | 14795 | 7484141 ~ 7484688 (+) | True | G421435 |
| TU483945 | other | upstream | 145151 | 7352649 ~ 7354332 (+) | True | CI01000304_07352697_07354032 |
| TU483706 | other | upstream | 1256486 | 6241233 ~ 6242997 (+) | True | G421162 |
| TU483012 | other | upstream | 2322692 | 5173223 ~ 5173339 (+) | True | G420524 |
| TU482914 | other | upstream | 3195651 | 4303336 ~ 4303832 (+) | True | G420445 |
| TU485573 | other | downstream | 478543 | 7978628 ~ 7978814 (+) | True | G422786 |
| TU485809 | other | downstream | 731909 | 8234441 ~ 8234534 (+) | True | G423009 |
| TU486091 | other | downstream | 1171685 | 8671770 ~ 8672555 (+) | True | CI01000304_08671901_08672203 |
| TU486477 | other | downstream | 1448951 | 8949036 ~ 8949422 (+) | True | G423614 |
| TU486746 | other | downstream | 2064520 | 9564605 ~ 9565573 (+) | True | CI01000304_09564068_09565679 |
