RNA id: TU484036


Basic Information

Item Value
RNA id TU484036
length 312
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G421449
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7502722 ~ 7503033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCACCAAGCTTCAGACACGCCCTCCATCAAGCACTGATGCCAACTCCCCGTGTGTTTATGCTGCATTCACACCATAACTACCTTAATTAAGAGATGGCAAGCCGTGAAGTTATACTAGGAGCGGTCCATGACTCGAATTTATGCATTTCAATGGCAACAGTACCAATGCTGAAATGAATCTGCAGCAGCCAGGTGCTGGTCAAGAGCTCTTTAAGTTGTTTGTTCATTACTATTGTAATGTTATGTGCTTTGAGTTATGTGGTAATTTAATGCCGTCTCTCGTGACACCTTTGCTCCCTGCTGTGCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484035 lncRNA upstream 1107 7501361 ~ 7501615 (+) True G421448
TU484034 lncRNA upstream 1388 7501063 ~ 7501334 (+) True G421447
TU484033 lncRNA upstream 2637 7499483 ~ 7500085 (+) True G421446
TU484030 lncRNA upstream 6326 7496030 ~ 7496396 (+) True G421443
TU484027 lncRNA upstream 11421 7491088 ~ 7491301 (+) True G421440
TU484037 lncRNA downstream 1164 7504197 ~ 7504403 (+) True G421450
TU484038 lncRNA downstream 1458 7504491 ~ 7504735 (+) True G421451
TU484039 lncRNA downstream 2111 7505144 ~ 7505353 (+) True G421452
TU484040 lncRNA downstream 2625 7505658 ~ 7505861 (+) True G421453
TU484041 lncRNA downstream 4759 7507792 ~ 7508082 (+) True G421454
CI01000304_07436662_07442126.mRNA mRNA upstream 60030 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 76695 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 148326 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07334198_07342123.mRNA mRNA upstream 160424 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07314354_07323703.mRNA mRNA upstream 178104 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07890347_07902088.mRNA mRNA downstream 387314 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 406465 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 424757 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 476045 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 485869 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU484021 other upstream 18034 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 148390 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1259725 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2325931 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3198890 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 475595 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 728961 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1168737 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1446003 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 2061572 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile