RNA id: TU484039


Basic Information

Item Value
RNA id TU484039
length 210
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G421452
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7505144 ~ 7505353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAACCTGCATACTTTACATATAGAACTAGAAGTTAACAGCCTATGTCTGTCAGGATTCAGAGAGACTAACTGTCCTCTCTTGTCCTTCTCAAGTTTGTCCTATTACTAGAAGGATAAGGAAGTACAGTGTGCAATTTGAATTCTATTTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACACTCATGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484038 lncRNA upstream 409 7504491 ~ 7504735 (+) True G421451
TU484037 lncRNA upstream 741 7504197 ~ 7504403 (+) True G421450
TU484036 lncRNA upstream 2111 7502722 ~ 7503033 (+) True G421449
TU484035 lncRNA upstream 3529 7501361 ~ 7501615 (+) True G421448
TU484034 lncRNA upstream 3810 7501063 ~ 7501334 (+) True G421447
TU484040 lncRNA downstream 305 7505658 ~ 7505861 (+) True G421453
TU484041 lncRNA downstream 2439 7507792 ~ 7508082 (+) True G421454
TU484042 lncRNA downstream 3745 7509098 ~ 7509373 (+) True G421455
TU484043 lncRNA downstream 5591 7510944 ~ 7511218 (+) True G421456
TU484044 lncRNA downstream 7173 7512526 ~ 7512800 (+) True G421457
CI01000304_07436662_07442126.mRNA mRNA upstream 62452 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 79117 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 150748 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07334198_07342123.mRNA mRNA upstream 162846 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07314354_07323703.mRNA mRNA upstream 180526 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07890347_07902088.mRNA mRNA downstream 384994 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 404145 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 422437 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 473725 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 483549 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU484021 other upstream 20456 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 150812 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1262147 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2328353 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3201312 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 473275 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 726641 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1166417 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1443683 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 2059252 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile