RNA id: TU484046



Basic Information


Item Value
RNA id TU484046
length 281
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G421459
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7514661 ~ 7514941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGACAATGAAGCTGCGGCTGAAATTGGTCATTTGTTCACACATTTACTAGTTTCTACATGGTAAAGTGCACATAGTGCACTATATAGGGGATAGGGAACGATTCAGACAGTGTAAATATGCTTTCCATTGACGCGAATGAAGTCCGTTTTCACGTTAGTATAAGCGCGAGCACAGTCTGCTATGGCCCAGGGACACGAGAGCACAGAGAGGATCATATCCGCGAGTCGGCTCAGACCACGAAAGGTATCGGACCCATTTAAATTCTGCACAGAATGCTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU484045 lncRNA upstream 268 7514194 ~ 7514393 (+) True G421458
TU484044 lncRNA upstream 1861 7512526 ~ 7512800 (+) True G421457
TU484043 lncRNA upstream 3443 7510944 ~ 7511218 (+) True G421456
TU484042 lncRNA upstream 5288 7509098 ~ 7509373 (+) True G421455
TU484041 lncRNA upstream 6579 7507792 ~ 7508082 (+) True G421454
TU484047 lncRNA downstream 64 7515005 ~ 7515544 (+) True G421460
TU484048 lncRNA downstream 899 7515840 ~ 7516231 (+) True G421461
TU484049 lncRNA downstream 1948 7516889 ~ 7517102 (+) True G421462
TU484050 lncRNA downstream 3697 7518638 ~ 7519433 (+) True G421463
TU484051 lncRNA downstream 9440 7524381 ~ 7524617 (+) True G421464
CI01000304_07436662_07442126.mRNA mRNA upstream 71969 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 88634 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 160265 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07334198_07342123.mRNA mRNA upstream 172363 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07314354_07323703.mRNA mRNA upstream 190043 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07890347_07902088.mRNA mRNA downstream 375406 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 394557 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 412849 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 464137 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 473961 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU484021 other upstream 29973 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 160329 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1271664 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2337870 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3210829 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 463687 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 717053 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1156829 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1434095 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 2049664 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile