RNA id: TU484049


Basic Information

Item Value
RNA id TU484049
length 214
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G421462
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7516889 ~ 7517102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATTAATACGATCACGGGTGCATTAAACAACTGGGCTTGCGGCTACGCCACGAGTAGCCAATTGAGAAGATAACTAGGCCTTTAATTGACAGCATGACATCGCCTCATTATCCCTTTTTATGTAAATGAGGTAAAAGAAAACCCGGAGCTCCTCGTGGTAAGTGCAAAAACAAGGTTAGCCTGAACCCGGGCCGCCATTTGCTTGCATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU484048 lncRNA upstream 658 7515840 ~ 7516231 (+) True G421461
TU484047 lncRNA upstream 1345 7515005 ~ 7515544 (+) True G421460
TU484046 lncRNA upstream 1948 7514661 ~ 7514941 (+) True G421459
TU484045 lncRNA upstream 2496 7514194 ~ 7514393 (+) True G421458
TU484044 lncRNA upstream 4089 7512526 ~ 7512800 (+) True G421457
TU484050 lncRNA downstream 1536 7518638 ~ 7519433 (+) True G421463
TU484051 lncRNA downstream 7279 7524381 ~ 7524617 (+) True G421464
TU485386 lncRNA downstream 18212 7535314 ~ 7535701 (+) True G422604
TU485390 lncRNA downstream 21815 7538917 ~ 7539308 (+) True G422608
TU485409 lncRNA downstream 44310 7561412 ~ 7561685 (+) True G422627
CI01000304_07436662_07442126.mRNA mRNA upstream 74197 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 90862 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 162493 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07334198_07342123.mRNA mRNA upstream 174591 7334062 ~ 7342298 (+) True CI01000304_07334198_07342123
CI01000304_07314354_07323703.mRNA mRNA upstream 192271 7313697 ~ 7324618 (+) True CI01000304_07314354_07323703
CI01000304_07890347_07902088.mRNA mRNA downstream 373245 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07909498_07914625.mRNA mRNA downstream 392396 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07927790_07957821.mRNA mRNA downstream 410688 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 461976 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 471800 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
TU484021 other upstream 32201 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 162557 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1273892 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2340098 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3213057 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 461526 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 714892 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 1154668 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1431934 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 2047503 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile