RNA id: TCONS_00019702


Basic Information

Item Value
RNA id TCONS_00019702
length 6862
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_009874
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22618620 ~ 22678294 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTGTGGATTTGGAGTATATTTCACTTTCATCGTAACCCagcaacaatttttttgtttttaaaaatatgtctaaTAGTTGTCTAAAcgtagtcatcttggctaaaacaatacTGAATATGGGccgtcagtgaaaatctaatagacatctaagaataggctaAAACTAGATCGAattaacagaaatgaatgactgcaAATATAAAGTCTgtttaatctgtctatttgacgactagttgagtttagtcttgttttagcaaAGCTGTTTacttttagatgtctattagatgtctattaaacacaaaattgtttgctgggtagtGTCAAGGATTGACAAAAGGTGTTTTGTCATTAGCATGTGCTGCGAGGTGTTATAACTTCATTACCTGGTAGTAAAACGCATCTTTCTCCACACACAACCCTTCAGAAGTCATCATTTGTTGACATTAAGATGAATGAAAATGCTAATTAAGTCTACCGTGGTTGTTTATTTTCATCTTCAGGAATGGCAGGACTACAGACTAACATGGAGCCCAGAAGAGTTTGATGGCATGAAGAAGGTCCGTCTTCCCTCCAAGCATATTTGGCTGCCTGATGTTGTTCTTTATAACAATGCTGACGGCATGTATGAGGTGTCATTCTACTCCAATGCTGTCGTCTCCTATGATGGAAGTGTCTTCTGGTTGCCACCAGCGATCTATAAGAGTGCCTGTAAAATTGAGGTGAAGCACTTCCCATTCGACCAGCAAAACTGCACTCTAAGCTTTCGTTCCTGGACCTATGACCGTACAGAAGTGGACTTGGTTCTGCGTGCAGACGTGGCAAGCATGGATGATTTCACACCCAGTGGTGAGTGGGATATCATTGCTCTTCCTGGCCGTCGAAATGAGAACCCTTCAGACCCAACTTACGTAGACATCACCTACGACTTCATCATCCGCCGAAAACCCCTGTTCTACACAATCAACCTCATCATTCCTTGCGTCCTCATCACCTCGCTGGCCATCCTGGTGTTCTACCTGCCGTCAGACTGTGGCGAAAAGATGACGCTGTGCATCTCGGTGCTCCTTGCCCTCACTGTGTTCCTGCTGCTGATCTCTAAAATTGTGCCCCCCACTTCTCTCGATGTCCCTCTGGTTGGGAAGTATCTGATGTTCACCATGGTGCTGGTCACATTCTCCATTgtgacgagtgtgtgtgtgctgaacgTGCACCACCGGTCGCCCACCACACACACTATGCCTCCGTGGGTGAAGTTGGTGTTCCTCAACAAGTTGCCTGCTCTTCTCTTCATGCGGCAGCCGCGTAACAGCAGTGAACGACAGCGTCTGCGCCAACGTCGGCGTGCCAATGAACAGCAGGAAGGTGGGCGAGGGGGTCTGGCTGCCGGGCTCATGGCAGGATTGGGTCTGAGCGGCTCTTCATCAGGGAGCAAAGAGAACAATGAGGCTTGCACATGCTATGTGAACCGGGCCTCTGTGAAACAGTTTGGGGCAGAGTTGGGTGGAGGGGGTGGTGGAGGTGGGTCAACAGATGGACTAAACGGAATAAGAGAAGGGGGCAGAGAGACCAGGGAAGGAGGTGCAAATCCATTGCAGGGATCTGCTCTACCTCGGGGGAAACAGCAGCCCCCTACTGTCCTCACTCAGGCTCTGCTGGCCCAGGCCTGTCCAGGGTTTGAGGAGGCTGTAGATGGAGTCCGCTTCATCGCAAACCACATGAAGAGTGAGGATGACGATCGTAGCGTGAGTGAAGACTGGAAATATGTGGCCATGGTGATTGATCGCCTTTTCCTCTGgatctttgtgtttgtgtgcgtctTTGGCACAATCGGAATGTTCCTCCAACCTCTGTTTCAAAACTACACAGCCAAAACAATCACCCACACACCAGGCTGACTAACCACCACCCCCCGGCACAACAATGGACTCTACCCACCATCAGCTGCGACAGGAGGGCGAAGGCAGGAGGGGGGGTCTGCGGAAGGGGAGGGCAAATATCACTCTGGACTAGCATTAGGTTTATATGAACCATTTTTGGAATATCACGCAGAGTGGGGATTTGGTCCAGGATTCCCGTTCAGGCCTCTCATCCACTCCACCTTCCCCTCCTTTTAGGTGACAAACCACACAAGCCAATCGACGAGAAGGGAAACACCTGTTTACTTTGCTCAGCAGCCAATCAGCACTCTTTTCTGCAAATAGCAAGCCATCCACCGCCCACAAGCTCTGAAATGAGCGGTCTGCTTCCTCAAGAGTCACATGACTTCCGTTCGTTACCTGTACTTGCAAGGTACTCAGACAGGGATGAACTAAAATGCTTGATCTAATGTCATTTCCATAAGGTTTTCATGCTCGTATTTATTTCATATGGTCTAGAAGCCTGTCATGATCCATTTGTTTACGAAGCAACAGTCTCTGTTCTATATGAACACACAGATGGTCATTAGACAATGGGCTTTGATGGAGTATTGTATCATCAATAATTTACTGTACTTAATGTGTGATTTGTATTATTGCAACACGCAACATAAGAGCAACCTAAGAGGGAGGATGCCTGATGATATAGAATGATATAGAGTGGGCTCTTAATGACTATATGAAGTGGTACTATAAAGTATTAGGTTTAAGTCTTTGGTTTTGGAGAGGGTTGGTTCTCAACATAAGTGTCCCAAGTTGTGCATTTTCAGTACTGCACTGAATGATGAGCTGCGCCTAGGCCCTAAATACAGTACTTTACAGAGGTCTGAAGTGGTTTGAACAAAATGGCTAATACCCAGACAAATTAGCGTTAGAGTGTGTTCACGCTTGTAGTTTGGTTCGCTTGGTATGGAAAATGATACATTTAATCATGGTACAGTGTTTGGAAGGCCAAACCTAAAGATAAAAAGCAAAAACTGATGTACATTTTATGACCATATTAAACATCCAAATTACCGCAGTGTGTTGGGCTGTTGGGGTATGTGTATTTTTATCAGTTAAGACACATGAAGagcttataaaatgtgtaaacaaAGAATTTCTTCATTGTCCACACCAGTGACACCTGTATTGAACTGTAAGGGActacaataatgaaaaaaaaaacaggtttgccAGAGTTTTTAGTCCAATCAgatgtctttggtctgtgttgTATTCATATGTTGGTTAAACTGCAAAAGTGTTTGTGTGGAAGTGGACCAAGACTCATCTTTTTTAAAGATCTTTCTGCTTGTTTGGTCCACACCATGGTTCAGATGGCTAATGAATGAGACTTAAGCCAAAATTTATTTCTGTGTTGAGTGACTGGTGTACTTCACAACCCTTCCCCTTCTGCATTCTGTTTGTTTTGCCCTGCAATAATACTTAAGAAACTAGTATTCAGTACACAGTGGGGTTTCTGTGAGCTGGAAACTGTCAAGTTTCTTTGCTGATGTTTTGAGTTCACGGTAAAAATCTGTAGCAGTAGTTCAAACTCACACTCATTCAGGGAAGAAAGAAGTGGGAACCAGTGAATgtacaacaactttaatcattaattaaaaacaaaacaaaagcatccTTATGGAGCTCCTCCACGGAACTCAAGTCTTGTTAAACACTCATGCTACCGGACTTGCCCTCCCATAGCTCTCAACCACAGATGACTCTGTTTCATCGCaacatataattacatttttcagaGGTACAGGTAAAATGAGCTTAATGAAGCTATTGCATCTAAGTTAGTAGCATTGATCAAACCAAATCtaccaagtgtgaacacacccttaaaGACTGTGATTTAGTGACTCCCAAGTTGGCATAAAAAAGATGAAATCCTGAGCAGTACTGCAGTACTGGACCCTGGACCTCCTATATTTTCCTTGCTCTCTCCTTTTCCCTAATGTTCTTGTTTATCTCTCTTGTTCCCATTAATCCATTTGGTTCACACCACATCCTTCGAAATACATCATAGCTTTTCATGAAATTGTAAGGCCACTGGTTATGTCCATTctcttatttaatttcatttcatcaGCAACTTCGGAGATCCTTGAGCTTATGtgaggggtgtcaaaattaattgtttctttaatGCACCATGATGCAGACGTGAACAATTCAGTATTGGTTCGGTAACAGGtcctaaccggttattatgtactgatgccatttattacatatattttatatggCGGCAGCTTACTACGGCGAGGGAGGAGACTGCAAGTAAttaaaatgctccaactacttaaaaagctGATAATTGCACAAtacactgcttgtgagtttgctagACAGTTTACACTGACAAGAAAGTACATTAGAACCCAGCTAGGAAAAAATGAAAGCTgtaaactctctctctcactctgtgtGGCCCCTTTGACCTGCGAGCGCGTGACCAATCATGACAAGGCTCAAAACGCAAGGGggaaaaaatttacatttgtttatttgctataaatgctcaattttttctgtgcatgtactttagTTTTGCCTGATACATTTAAAAAGAGTGTTTTTTGAgaaggtaaaattaaaggtacaggacatatatcttactgcttgtattaaagaacaaaactgtgttacaaataatatataaatacatttataaattatccattttaatacaagaattattctgttgtaaaatatcaaattgtttatGAAAAACATCGACAATGCACTGTGAAGCACCGATATATCGAACTGAACCgcatcgatggcatgataatcgtaaccgaactgaaCCTTGAGACCAGtttaggttcacacccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtgtgtttaacaATTTATGATCCTCCAGAATTAATTCTAAAGCTGAATTGGTGCTCAAGAaacagatattattattaatattatcagtaTAAAAAACAGCTGTCctgcttaatatttttgcttttttcaggattcttaaatgcattaaaatgacacAATGAACAGcattcattagattttttttcaaagcaaaagTCATTACTGTCACTTGTAATTTATTTAACGCATCGTTGCTAAAAAAAGCCTTAATGAGCCCATAGTTTGAACAAAAGTGTGTATTATATAGCCTCGTCATCATAATTTGTGAAAACAGCGAGGCAGTTTAATTTGGAGTGATTACCTCTGCCTCTATTTCGTTCTACCTATTTGCACATCATATCTTGACCCTCATAAAACCAAGGGCCACTAGCTGGCAGTTAAGACTTTTGAGTGTAGTTTTCTTATCCATTTCGTTCATTAAGCAAGGAATCTCCAAAACTCATCTTTCATAAAGCAGATTATGCAAACGTGTTCATCCGTGGATTAATTTTctacatttgctaaatgcttcAAATGACCTTGCATACTTGGCTTCTTCAATCTTTCTCATACCTCCTCTCAGATTTTCTTCACCAGCacttttctgcaaaaaaaaagccCTATTACCAACCACAAAGCTGCATTTTACAGCTGCTCTATTACATTAACATTTCCTGACcattagctttttaaaaatacatatgagAGTGAAAGTCAAGCTATgaatttattacttttgtctttgTTTCGGCTCCAACTGGCAGGAGGTCTCCGGTGACTCAACATGTCTGTGTTTTTCACTGTGACATCAGCGGCGGGGTACAAGTCAGTGTTCACCACATGGGGTCGTATctctattctttaaaacattctgTTCATAAGAGCAAGCCAAATCATCTACAGCAAAAGACTATGTGTGATGAAGTCTCAAATTCATCAACAAAATGGAGACAAATGAAGGAGTGTCTCCCTATATATGTTTTGACACAACCTGTTCAATACTGCAATAATCCAGAAGTTTGACGTCACATAAATTCTGTGTCAAGACTGTGTGTTGGCCTAAAAAAAATGCACTGTCTTATTTACACTGGCACTTAAACACATGCCTCCTATCCTCACCTCTCTCCCTTGGCTGACCGAACATTTAACCTTTCAAATAAAGATTAGACATACATTATCTCTTTGTGTTTGACAATTCTTGGCCTAATTGCACAAATAACACTCCTTGTGTTTCTCTGTAAGGGAAAGTCAGtgttttaaattgtcattttcaATTCTGTTTAAAATTTCTTCACCAAGAAAGCCTTTCGGACTGACTTTTTGTGTTGTTCTGCTGTCCTTCTGTTCACCAGTCTCTAAACTCACATTCATTGGCATTGCCAACTTCTGACAACATAATAAATTCATGTCTTATTTCAAGTTGGCTGCGCATCCTCTTTGGTAACAGCTCCTCAAGCCAGCTATTCATGAGAGCAGCTTACAGAAAGGAAAAGCTCGTCCACATATTATATTAATGTGACCTTTAGTTTATGCTACATAAAACAGGACTGCTACTGTATGTTCCTACATCCCCGGTGATGAAAATAGTGAATGCTTCATGTATGCAAGAAGATATAATTTCACTGAATTATAAATGAGAATTCTCATGCAGTGTTTCCTCAAATGAGAAAGCTACTGTCTACAAACACAAAGAATCGAGATGCCCCGTCTGGTCTGGAcaattttaagacctttttttgtTGTAAGCTTAGAACTGATTCAACACTGCCCTCTGTTGGTCAAGATGTAATTTAGTTTCGGTGTTCATTTTTACACAGTAGGCCTATTTTGCCTTTTAAATGTTCAATGATATTGTTCATTTGAGCCACATACATTAAACCACATATAATTTAATTTGCTGCCCAAGTTACAATTATTTACAGTAGCTACTTGCTAACATTATTTCCctgtattgttttaattaaacgtTCTTT

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04725 Cholinergic synapse
ko05207 Chemical carcinogenesis - receptor activation
ko05033 Nicotine addiction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070821-3 Predicted to enable neurotransmitter receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant nocturnal frontal lobe epilepsy and autosomal dominant nocturnal frontal lobe epilepsy 3. Orthologous to human CHRNB2 (cholinergic receptor nicotinic beta 2 subunit).

Ensembl:

ensembl_id ENSDART00000179762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021710 lncRNA upstream 75155 22575355 ~ 22579326 (+) True XLOC_009872
TCONS_00021926 lncRNA upstream 77327 22575143 ~ 22577154 (+) False XLOC_009872
TCONS_00021925 lncRNA upstream 325453 22327970 ~ 22329028 (+) True XLOC_009870
TCONS_00021924 lncRNA upstream 326979 22323766 ~ 22327502 (+) True XLOC_009869
TCONS_00021923 lncRNA upstream 540545 22022533 ~ 22113936 (+) True XLOC_009868
TCONS_00021928 lncRNA downstream 16932 22695226 ~ 22696496 (+) True XLOC_009875
TCONS_00019708 lncRNA downstream 194566 22872860 ~ 22876095 (+) True XLOC_009877
TCONS_00019712 lncRNA downstream 616392 23294686 ~ 23297206 (+) True XLOC_009879
TCONS_00021929 lncRNA downstream 1133307 23811601 ~ 23821746 (+) False XLOC_009891
TCONS_00019740 lncRNA downstream 1235788 23914082 ~ 23915127 (+) True XLOC_009894
TCONS_00019698 mRNA upstream 51127 22587733 ~ 22603354 (+) True XLOC_009873
TCONS_00019697 mRNA upstream 51291 22587661 ~ 22603190 (+) False XLOC_009873
TCONS_00019696 mRNA upstream 293262 22345513 ~ 22361219 (+) True XLOC_009871
TCONS_00019693 mRNA upstream 716437 21918503 ~ 21938044 (+) True XLOC_009867
TCONS_00019692 mRNA upstream 716466 21917673 ~ 21938015 (+) False XLOC_009867
TCONS_00019703 mRNA downstream 83552 22761846 ~ 22790881 (+) True XLOC_009876
TCONS_00019704 mRNA downstream 186019 22864313 ~ 22881338 (+) False XLOC_009877
TCONS_00019705 mRNA downstream 186428 22864722 ~ 22872525 (+) False XLOC_009877
TCONS_00019706 mRNA downstream 187648 22865942 ~ 22879192 (+) False XLOC_009877
TCONS_00019707 mRNA downstream 187669 22865963 ~ 22872178 (+) False XLOC_009877
TCONS_00019682 other upstream 950802 21699006 ~ 21703679 (+) False XLOC_009863
TCONS_00019667 other upstream 1740997 20913413 ~ 20913484 (+) True XLOC_009854
TCONS_00019658 other upstream 2149616 20496773 ~ 20504865 (+) True XLOC_009846
TCONS_00019655 other upstream 2350206 20296823 ~ 20304275 (+) True XLOC_009845
TCONS_00019651 other upstream 2483653 20167834 ~ 20170828 (+) True XLOC_009843
TCONS_00019718 other downstream 719507 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019728 other downstream 928937 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019735 other downstream 1159626 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019751 other downstream 1282577 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019767 other downstream 1837798 24516092 ~ 24517092 (+) False XLOC_009904