RNA id: TU485519



Basic Information


Item Value
RNA id TU485519
length 2338
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G422732
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7921713 ~ 7924050 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTGTTAATCATGCGTTACTCATTTTACCTAAAAAATATCTTCTGTGGTGTACATTTAGCTGTCATTCTTACACAATTAATAATTTTGTCTTTTTTGTCATTTTTTAAAAATTATTATTTCAATAAAAATTACTTTTTGCTAAGTCAGCCATCACTATGATATAGTGTTTGGGTTTTTCTTGAATCTTTTTGAAAGTACGTAACCACCCAGCAAAGCAAGCAACCACTCAGAACACAGAATTAGCCTGTATTAGAGCTCTGAAGCACATGTCTGGGAATTTGACCTGAGGTCAGCTCTCCTTCGGCTCTACAGTTCACACACCGAGCCTGTTGTTGATACTTCTGTGAGATGATTACTTTGGAGCCAGACCAGCCCAGAGACAGAGTGATGTCTGTGGTCCTTTCATCAACTATTTGTCATGTTACATGCAGCTCTAAGTTATTTTGATCTTACCACATTCCTCCTATTAGTGTAGCTTTTTTTCTCGTTGAGATGTTAGGGTTAACCAGACCCAGCTCCTCCTAAACATGAGTTTGGACCATTCTGGCAACTGCCCGTCCCTTATATCTGACTCACGTTTCTTGTACAAGTTCATGCACTTATCTTAACTGTGAATATGAGATGCCTGCCATATTTTTGCTCTGCCATTTTTTTTTGTCTGAGATAATGTGGACTTTCACAGTTCCTTGCTTAAGTTCCTTATGGATCACCTAGGGTTGAATGAGCACCACAGTGCTGTAGTCGAACAGATATCTGTAGTCGAAATGCTTCATCTGTCCTTGGTTTTACAGCAGTGTGCAGAAAAGCTATTAGCATTGAATCCATTTTATCCATTGATTTTGTGTGAAATGCTGCACAAATTCATTTGCACTATATCCTCGAGGGGTGTTACATGCATTTGCTCACAAGAGGCTGAAACTAATTTACCAACATTAAAGCGCCTAAACTGCCTTTGTGAGTTCACCTGGTTTTAATTTACTTGAAAATGAATCAGTTTAGATGGAGTTAGCAGTCTAAAGCGTTACTAAACTGCCCTCTTGTGGCGCAGATGGGAAAATAAGGGTGTGCCTCATTCTAACCGAGCTGGATATGGATAAATACATCATCTGTATTCCAACATCTTGTGGTATTTGCTTATGGATACAGTTGCCTACAACTACAGATTTTTTTTTTCTTTTCTTTTCACGGTTTGCCCCTGTCAGGAGTCTTAAGATAGCTTTGCAGAAGCCAAATAATTGATGAGTCAGCAATTGCTGCAACCTAGGGCGTTTTCTTCAGCACAACACAAATCAAATCAGAATACAGTCGGTACGTTCCATTCAGTAACATCGACATGCATCGTAATGCATGTGTTGATCTTTTTTATCTTACTGTGCCGTATTCACACTGCAGAAGTATTTGTCACAAGTGGTCGCTTTGTGTGTATTTTAGGCTCTTTTAAATAAGTTATCTTCTTAAAATAACAGGTTAAAAATCTAGTTCCCCTGAGTTGCATATTCCTGTTTGAATTAGTCTAGCCTTGCAGTAGCCCATGGCAACCGCATAGGCTGTAGGAGGAGGAGCTGTAATTGAACTTCCAGTCTTGTGATTGGCTGAAACAGGTGTTCTGAGGTTCCGTAATGAATGATGACTGAAGTATGCATACTTGTGTGCTCCAAAGCAAGACCATTATCTAAGCCACATAATGACTTCTGTTAACCAGAGAAGAGTTTTGGAAAAATCTATTAAGTTTTCTCTTTACGTCATTTTTATGCATGCATGTCTGATGTTTGATTTGGGGGAATTAAATGAAACGAGTTGATCCTTTGTTCCTTTTGTGGCACAAACTGTCTTTCTCACTCTTCCCCCCTCAGTCCAACAGCCTGCAAAGACAGTAGCTAATGCAGCAACTCTTTTGAGCGGGTAAGGACACATGTTGTTGTTATGGAAACTGGGCTTTCAGAGCTATTATTGTGAGGTCTCTTTGGAGAAGCGAACAGAATGTGTCTCCAATGAGCGACTCTCCACCGAAATGTTCCACTGACCAACATACTCACATACTGCAAAGTGAGAAATTTGTGCGCAAAATATATTGGCTTTTTTACTTGAAATCGAACTATTTCTAATATGATAATTAGGCTACTATGTGTTGCTGCTATAGACCTTGGCTTATTCAGAGCAGAGCCATGACAGGTATAAAAAGAGCAAGGCTTGTGAGGATTACGTTTTCAGTGGCATCCGCCATTTTTTTTTAGCTTTATACAGGGTTTTTTTTTCTACTGAAATTTCTTGGAAAGATATTTTTGCAGTGTTTTGTCAGCAGAACAATCCAAAAACACATTAAATAACAGTACAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU485520 lncRNA upstream 13595 7758062 ~ 7908118 (+) True G422733
TU485510 lncRNA upstream 164946 7756566 ~ 7756767 (+) True G422725
TU485507 lncRNA upstream 170130 7751240 ~ 7751583 (+) True G422722
TU485504 lncRNA upstream 178424 7743075 ~ 7743289 (+) True G422719
TU485433 lncRNA upstream 314033 7603453 ~ 7607680 (+) True G422649
TU485565 lncRNA downstream 45207 7969257 ~ 7969479 (+) True G422778
TU485566 lncRNA downstream 47087 7971137 ~ 7971363 (+) True G422779
TU485567 lncRNA downstream 48478 7972528 ~ 7972733 (+) True G422780
TU485568 lncRNA downstream 49742 7973792 ~ 7973992 (+) True G422781
TU485569 lncRNA downstream 50787 7974837 ~ 7975048 (+) True G422782
CI01000304_07909498_07914625.mRNA mRNA upstream 5771 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07890347_07902088.mRNA mRNA upstream 18955 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07436662_07442126.mRNA mRNA upstream 479021 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 495686 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07352697_07354032.mRNA mRNA upstream 567317 7352621 ~ 7354396 (+) False CI01000304_07352697_07354032
CI01000304_07927790_07957821.mRNA mRNA downstream 3740 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07979388_07979919.mRNA mRNA downstream 55028 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 64852 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_08120416_08124549.mRNA mRNA downstream 196366 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08222591_08229908.mRNA mRNA downstream 298541 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
TU484021 other upstream 437025 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 567381 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1678716 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2744922 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3617881 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 54578 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 307944 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 747720 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 1024986 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1640555 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile


TU485519 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
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TU485519 Expression in each Bioproject

Bar chart with 32 bars.
TU485519 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.