RNA id: TU485712


Basic Information

Item Value
RNA id TU485712
length 512
lncRNA type intronic
GC content 0.41
exon number 2
gene id G422918
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7928969 ~ 7929506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCCCAAAAAAATGCATCCATCCATCATAAAAATAATTAATATGTTGGTTAATAAATGCCTTCTGAAGTGAAGTGATGCATTTTTGTTTTTAGCTAAAACGAATAGCTTCCGGCAGATGACCGTAAGCACACTGCGCAAGTCGACTTGCACAACAAGAGTAACCCGTGACGCGATGTATGACGCAGGATGTAGGAGTATAGTAAGCTTAGACGCGGTTTAAACAAATAGGGCTGTGCAACAAACTCATGCTCCTCTTCGCTTATATCGAAATCCTTCGACATTTCTCCTTAAAATTTCTTGTTTTAGACTTCTAATTTGTGACCGGTGTTTTGTTTCGCTCTATCCTCTGTGCTTCCGCGTTTGTCATTGTGCCACGCGTTGGGTCAGGGGTTACTCTTCCGCCGCAAATCGAAGCTTAATAAAGATTTAAATATGGATATTTTTCTTACAAAAACCCATCGCTTCACTTCAGAAGGCCTTTATTAACCCCCTGGAGCCGTATGGATTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485633 lncRNA downstream 9179 7916488 ~ 7919790 (-) True G422841
TU485640 lncRNA downstream 14016 7913434 ~ 7914953 (-) True G422846
TU485635 lncRNA downstream 26206 7901473 ~ 7902763 (-) False G422843
TU485637 lncRNA downstream 26206 7901473 ~ 7902763 (-) True G422843
TU485689 lncRNA downstream 94902 7833792 ~ 7834067 (-) True G422895
TU485714 lncRNA upstream 32864 7962370 ~ 7962729 (-) True G422920
TU485725 lncRNA upstream 40982 7970488 ~ 7970694 (-) True G422931
TU485727 lncRNA upstream 46437 7975943 ~ 7976391 (-) True G422933
TU485729 lncRNA upstream 52224 7981730 ~ 7981941 (-) True G422935
TU485737 lncRNA upstream 72894 8002400 ~ 8004601 (-) True G422939
CI01000304_07612069_07709665.mRNA mRNA downstream 219304 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 462539 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 600766 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 617258 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_07282197_07285838.mRNA mRNA downstream 643131 7281481 ~ 7285838 (-) True CI01000304_07282197_07285838
CI01000304_07961608_07968820.mRNA mRNA upstream 32059 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_08165245_08217042.mRNA mRNA upstream 235691 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 288128 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 399589 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 580964 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
TU485601 other downstream 276266 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1145923 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1297470 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1445474 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 932717 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1638850 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1807240 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2223940 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2224353 10153859 ~ 10164330 (-) True G424458

Expression Profile