RNA id: TU485567


Basic Information

Item Value
RNA id TU485567
length 206
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G422780
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7972528 ~ 7972733 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAACATGCATTTCATGCATTTAGGCTTAAGCTTTGTCTTTGAAACTGGGGTCTAATATTTAAAAAAAAAAAAAAAAAAAAAGGTTAAATTGCTCATTGATCATTTGTGAGCCCTTTTTGAAAAATGTAATGACGTACATTATAAAAATCATTAAACAAATCACAGTAAAAAGAAATATTAATTATGAAACTTTCTTTATTGACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485566 lncRNA upstream 1165 7971137 ~ 7971363 (+) True G422779
TU485565 lncRNA upstream 3049 7969257 ~ 7969479 (+) True G422778
TU485519 lncRNA upstream 48478 7921713 ~ 7924050 (+) True G422732
TU485520 lncRNA upstream 64410 7758062 ~ 7908118 (+) True G422733
TU485510 lncRNA upstream 215761 7756566 ~ 7756767 (+) True G422725
TU485568 lncRNA downstream 1059 7973792 ~ 7973992 (+) True G422781
TU485569 lncRNA downstream 2104 7974837 ~ 7975048 (+) True G422782
TU485570 lncRNA downstream 2442 7975175 ~ 7975403 (+) True G422783
TU485582 lncRNA downstream 54125 8026858 ~ 8027123 (+) True G422795
TU485590 lncRNA downstream 67079 8039812 ~ 8040230 (+) True G422803
CI01000304_07927790_07957821.mRNA mRNA upstream 14066 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07909498_07914625.mRNA mRNA upstream 56586 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07890347_07902088.mRNA mRNA upstream 69770 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07436662_07442126.mRNA mRNA upstream 529836 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 546501 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07979388_07979919.mRNA mRNA downstream 6345 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 16169 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_08120416_08124549.mRNA mRNA downstream 147683 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08222591_08229908.mRNA mRNA downstream 249858 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08232073_08235598.mRNA mRNA downstream 258560 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
TU484021 other upstream 487840 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 618196 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1729531 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2795737 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3668696 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 5895 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 259261 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 699037 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 976303 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1591872 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile