RNA id: TU485568


Basic Information

Item Value
RNA id TU485568
length 201
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G422781
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7973792 ~ 7973992 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGACAAGCCAGAATTATTTTGGAATAATGTGCTGTGGACAGATTAAACTAAGATAGAGTTATCTGGTCACAACCAGAAGCACTTTGCATGGCAGAAAAAGAACAGCGTTCCAGAAGCAAAACCTGCTCCCTACTGTAAAATTTGGTGGAAGGTCCATCATGCTATAGGGCTGTGTGGCAAGCACAGGTACTGCAAACCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485567 lncRNA upstream 1059 7972528 ~ 7972733 (+) True G422780
TU485566 lncRNA upstream 2429 7971137 ~ 7971363 (+) True G422779
TU485565 lncRNA upstream 4313 7969257 ~ 7969479 (+) True G422778
TU485519 lncRNA upstream 49742 7921713 ~ 7924050 (+) True G422732
TU485520 lncRNA upstream 65674 7758062 ~ 7908118 (+) True G422733
TU485569 lncRNA downstream 845 7974837 ~ 7975048 (+) True G422782
TU485570 lncRNA downstream 1183 7975175 ~ 7975403 (+) True G422783
TU485582 lncRNA downstream 52866 8026858 ~ 8027123 (+) True G422795
TU485590 lncRNA downstream 65820 8039812 ~ 8040230 (+) True G422803
TU485765 lncRNA downstream 90666 8064658 ~ 8065423 (+) True G422966
CI01000304_07927790_07957821.mRNA mRNA upstream 15330 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07909498_07914625.mRNA mRNA upstream 57850 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07890347_07902088.mRNA mRNA upstream 71034 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07436662_07442126.mRNA mRNA upstream 531100 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 547765 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07979388_07979919.mRNA mRNA downstream 5086 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 14910 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_08120416_08124549.mRNA mRNA downstream 146424 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08222591_08229908.mRNA mRNA downstream 248599 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08232073_08235598.mRNA mRNA downstream 257301 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
TU484021 other upstream 489104 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 619460 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1730795 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2797001 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3669960 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 4636 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 258002 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 697778 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 975044 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1590613 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile