RNA id: TU485570


Basic Information

Item Value
RNA id TU485570
length 229
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G422783
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7975175 ~ 7975403 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGACGTTTGACTTAAACCTTCTCCTAACTGTCTCGAAAATTTGACAAATTTTCACACTCCTACAAATTCAAAATAACTTGAAATATATTAAAATGCGTCTCTTCAGGTAAGACAAACACATTCTTATGATTTCATAATAATAATCGCGCCTGTAATAATCGCATGCTGCGTTCGCAAATCAGTCAATTAAACATTTTTCTTTAAATTGCTGACGTTTTTCATCATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485569 lncRNA upstream 127 7974837 ~ 7975048 (+) True G422782
TU485568 lncRNA upstream 1183 7973792 ~ 7973992 (+) True G422781
TU485567 lncRNA upstream 2442 7972528 ~ 7972733 (+) True G422780
TU485566 lncRNA upstream 3812 7971137 ~ 7971363 (+) True G422779
TU485565 lncRNA upstream 5696 7969257 ~ 7969479 (+) True G422778
TU485582 lncRNA downstream 51455 8026858 ~ 8027123 (+) True G422795
TU485590 lncRNA downstream 64409 8039812 ~ 8040230 (+) True G422803
TU485765 lncRNA downstream 89255 8064658 ~ 8065423 (+) True G422966
TU485771 lncRNA downstream 93659 8069062 ~ 8069399 (+) True G422972
TU485855 lncRNA downstream 172668 8148071 ~ 8148440 (+) True G423041
CI01000304_07927790_07957821.mRNA mRNA upstream 16713 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07909498_07914625.mRNA mRNA upstream 59233 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07890347_07902088.mRNA mRNA upstream 72417 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_07436662_07442126.mRNA mRNA upstream 532483 7436662 ~ 7442692 (+) True CI01000304_07436662_07442126
CI01000304_07409324_07425656.mRNA mRNA upstream 549148 7407720 ~ 7426027 (+) True CI01000304_07409324_07425656
CI01000304_07979388_07979919.mRNA mRNA downstream 3675 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07989774_08014921.mRNA mRNA downstream 13499 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_08120416_08124549.mRNA mRNA downstream 145013 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08222591_08229908.mRNA mRNA downstream 247188 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08232073_08235598.mRNA mRNA downstream 255890 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
TU484021 other upstream 490487 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 620843 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1732178 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2798384 5173223 ~ 5173339 (+) True G420524
TU482914 other upstream 3671343 4303336 ~ 4303832 (+) True G420445
TU485573 other downstream 3225 7978628 ~ 7978814 (+) True G422786
TU485809 other downstream 256591 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 696367 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 973633 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1589202 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679

Expression Profile