RNA id: TU485727


Basic Information

Item Value
RNA id TU485727
length 449
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G422933
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 7975943 ~ 7976391 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAGAGCAACAGGAAGGTAAGTAAATGATGACACAATTTTAATCTATTTTATGTTCTTATGCAATGAAAATGGGGGCATATATACTTTGAAGAGTTGAAGGACTATTTTTTTTTTTTTTCTGGTCATGGATTATTGTGGAACAAAATTATGAAACAAACCATGATGATGGATCTTCGAGAGAAAGCAATGGACAGAAATACAGAGTGACATTCACAGTCACATGCCATTTCATAAAGCCGCACATAAATCATGCTTTTGTTTATTTTTTTATTTTTATTTTTGTTATTATTATTTATTTATTTTTTTTAATTTTTTTTTTGCTGAGACATTCACTTTTTTATACCAAAGCTGACCTTCTAGGACCTCAATGATCAATGCTGATGAATTACACCTTTCTCCACCGACCGAAAATGTGCTCAGGAAGTTTCATATCAAACCAACAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485725 lncRNA downstream 5249 7970488 ~ 7970694 (-) True G422931
TU485714 lncRNA downstream 13214 7962370 ~ 7962729 (-) True G422920
TU485712 lncRNA downstream 46437 7928969 ~ 7929506 (-) True G422918
TU485633 lncRNA downstream 56153 7916488 ~ 7919790 (-) True G422841
TU485640 lncRNA downstream 60990 7913434 ~ 7914953 (-) True G422846
TU485729 lncRNA upstream 5339 7981730 ~ 7981941 (-) True G422935
TU485737 lncRNA upstream 26009 8002400 ~ 8004601 (-) True G422939
TU485745 lncRNA upstream 37651 8014042 ~ 8016684 (-) True G422946
TU485750 lncRNA upstream 52819 8029210 ~ 8029483 (-) True G422951
TU485756 lncRNA upstream 68132 8044523 ~ 8044813 (-) True G422957
CI01000304_07961608_07968820.mRNA mRNA downstream 6994 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 266278 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 509513 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 647740 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 664232 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_08165245_08217042.mRNA mRNA upstream 188806 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 241243 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 352704 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 534079 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 590803 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
TU485601 other downstream 323240 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1192897 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1344444 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1492448 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 885832 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1591965 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1760355 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2177055 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2177468 10153859 ~ 10164330 (-) True G424458

Expression Profile