RNA id: TU485737


Basic Information

Item Value
RNA id TU485737
length 530
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G422939
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8002400 ~ 8004601 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGACACAGGAAGTCCATTAGTAGGCATGCAGGTGTAGTTCCCTGAATCCGCTGGAGTCAAACGCGATATAAGTAGTGTACCATCCACTATGATCTTAACACGAGACTTCAGAGACTCAATGTGGTAAATGTCTTCTCCTTGTCTTTGCCACACATAGGTCATGTTTGGTGGGTCAGCCTCAGCCTGGCACTTCAACTTGGCATCCTGGGACATGTTGAGAACAGTGTCGGTTGGAGGAATTACAATCACCGGAGGGCCAATGACTTTGACCTTTGTGATGTGAGTTACATTTCCTTCAGTGTTGGAGGCGTGACACTGATACTGGCCTGATGTTTCTCTGCTTACAGCATGGAAAGATACACTTCCATTCATGATCTTTACTTTGTTTTGAGGTTTTATTGGCCCTCCATCTTTAGACCAGGTTATTGTAGGCCGTGGATTTCCCTGGGCAGCACACTTCAGGGTTACTGATCTACCTACAAATACCTCAACGGCAGGAGGTGAGGTTTCCGTAAGCACAGGAGGTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485729 lncRNA downstream 20459 7981730 ~ 7981941 (-) True G422935
TU485727 lncRNA downstream 26009 7975943 ~ 7976391 (-) True G422933
TU485725 lncRNA downstream 31706 7970488 ~ 7970694 (-) True G422931
TU485714 lncRNA downstream 39671 7962370 ~ 7962729 (-) True G422920
TU485712 lncRNA downstream 72894 7928969 ~ 7929506 (-) True G422918
TU485745 lncRNA upstream 9441 8014042 ~ 8016684 (-) True G422946
TU485750 lncRNA upstream 24609 8029210 ~ 8029483 (-) True G422951
TU485756 lncRNA upstream 39922 8044523 ~ 8044813 (-) True G422957
TU485758 lncRNA upstream 46493 8051094 ~ 8051602 (-) True G422959
TU485759 lncRNA upstream 49009 8053610 ~ 8053832 (-) True G422960
CI01000304_07961608_07968820.mRNA mRNA downstream 33451 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 292735 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 535970 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 674197 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 690689 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_08165245_08217042.mRNA mRNA upstream 160596 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 213033 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 324494 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 505869 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 562593 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
TU485601 other downstream 349697 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1219354 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1370901 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1518905 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 857622 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1563755 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1732145 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2148845 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2149258 10153859 ~ 10164330 (-) True G424458

Expression Profile