RNA id: TU485590


Basic Information

Item Value
RNA id TU485590
length 419
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G422803
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8039812 ~ 8040230 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTACTTTTATAGGAAAAAAGGAAATAAAACAATATTGGTAGGTTTTGTCAGTTTTTAACACTGATATAATAATGGCCATTTTAAAGGGGTCATGACATGAGAAATCAAATTTGCCTTGATCTTTTGACATATAAGAGGTCTTTGTACCATTAAAACATCCTGCAAGTTTCATAACTTAAAATGTCATCATTATAAACAAAACATTTGTTTAATCAAGCTCCAAAAAATGGCTCGTTTTGATATTGTGGGATCTGTGATGTCACACGGGCAAATATATTTGCATATGACTCCCTCCAGAGCAAGACATCAACAAATAGTACATCACTGCACCATAGGCCCCACCCACTGGCATTCAGACTCTTAATGGCTGACATTTGCCTGCACTGAATGTGAATGTCGTGTCAAAAGCAAACTGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485582 lncRNA upstream 12689 8026858 ~ 8027123 (+) True G422795
TU485570 lncRNA upstream 64409 7975175 ~ 7975403 (+) True G422783
TU485569 lncRNA upstream 64764 7974837 ~ 7975048 (+) True G422782
TU485568 lncRNA upstream 65820 7973792 ~ 7973992 (+) True G422781
TU485567 lncRNA upstream 67079 7972528 ~ 7972733 (+) True G422780
TU485765 lncRNA downstream 24428 8064658 ~ 8065423 (+) True G422966
TU485771 lncRNA downstream 28832 8069062 ~ 8069399 (+) True G422972
TU485855 lncRNA downstream 107841 8148071 ~ 8148440 (+) True G423041
TU485857 lncRNA downstream 110572 8150802 ~ 8151170 (+) True G423043
TU485860 lncRNA downstream 112627 8152857 ~ 8153236 (+) True G423046
CI01000304_07989774_08014921.mRNA mRNA upstream 24508 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 59092 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07927790_07957821.mRNA mRNA upstream 81350 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07909498_07914625.mRNA mRNA upstream 123870 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_07890347_07902088.mRNA mRNA upstream 137054 7890347 ~ 7902758 (+) True CI01000304_07890347_07902088
CI01000304_08120416_08124549.mRNA mRNA downstream 80186 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08222591_08229908.mRNA mRNA downstream 182361 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08232073_08235598.mRNA mRNA downstream 191063 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08547909_08562342.mRNA mRNA downstream 507679 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 542174 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
TU485573 other upstream 59077 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 555124 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 685480 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1796815 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2863021 5173223 ~ 5173339 (+) True G420524
TU485809 other downstream 191764 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 631540 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 908806 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1524375 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 2080169 10120399 ~ 10127322 (+) True G424246

Expression Profile