RNA id: TU485756


Basic Information

Item Value
RNA id TU485756
length 291
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G422957
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8044523 ~ 8044813 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTTATTCTTTGCACGTTCGCTTTGTAGACACTGGATCGGTACTTCCGCCTATGTCATGCATGACCTTTGTAATGTGATTACATCATACGTGCGGATCGCAGAGCTAGTGCAAGACGAGGATTTGTGGTTAAAAAGCATATAAATTTTAATTTTTTTTTTTTTTTTTTTAGAAAATGACCGATTGTTTTGCTAGATAAGACCCTTATTCCTCGTTCTTCACCCTCAAGCCATAGGTGTATATGACTTTCTTCTTTCTCATGAGCATCCAGGCTTTATAATCGCAGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485750 lncRNA downstream 15040 8029210 ~ 8029483 (-) True G422951
TU485745 lncRNA downstream 27839 8014042 ~ 8016684 (-) True G422946
TU485737 lncRNA downstream 39922 8002400 ~ 8004601 (-) True G422939
TU485729 lncRNA downstream 62582 7981730 ~ 7981941 (-) True G422935
TU485727 lncRNA downstream 68132 7975943 ~ 7976391 (-) True G422933
TU485758 lncRNA upstream 6281 8051094 ~ 8051602 (-) True G422959
TU485759 lncRNA upstream 8797 8053610 ~ 8053832 (-) True G422960
TU485766 lncRNA upstream 19845 8064658 ~ 8064909 (-) True G422967
TU485788 lncRNA upstream 41634 8086447 ~ 8086790 (-) True G422988
TU486201 lncRNA upstream 103258 8148071 ~ 8148469 (-) True G423356
CI01000304_07961608_07968820.mRNA mRNA downstream 75574 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 334858 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 578093 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 716320 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 732812 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_08165245_08217042.mRNA mRNA upstream 120384 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 172821 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 284282 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 465657 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 522381 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
TU485601 other downstream 391820 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1261477 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1413024 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1561028 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 817410 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1523543 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1691933 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2108633 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2109046 10153859 ~ 10164330 (-) True G424458

Expression Profile