RNA id: TU485759


Basic Information

Item Value
RNA id TU485759
length 223
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G422960
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8053610 ~ 8053832 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGTCACATCTAGCAAGCAAGTCATGTGATTTAGGGCATACACTTAAGATTTAAAAGGGCAAGTACCAACAATGTAACATGATGGATTGGAGTTTGAGAGACTAATTTAATGGTTTAATACATTAAAAAAAAAAAAAAAAAAAAAACATGTATCACAATAAATAGTAGCCTTTTATGTCAAGAGAGTAAGTAATAAAATATGCAGTATTGTTTTATGGGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485758 lncRNA downstream 2008 8051094 ~ 8051602 (-) True G422959
TU485756 lncRNA downstream 8797 8044523 ~ 8044813 (-) True G422957
TU485750 lncRNA downstream 24127 8029210 ~ 8029483 (-) True G422951
TU485745 lncRNA downstream 36926 8014042 ~ 8016684 (-) True G422946
TU485737 lncRNA downstream 49009 8002400 ~ 8004601 (-) True G422939
TU485766 lncRNA upstream 10826 8064658 ~ 8064909 (-) True G422967
TU485788 lncRNA upstream 32615 8086447 ~ 8086790 (-) True G422988
TU486201 lncRNA upstream 94239 8148071 ~ 8148469 (-) True G423356
TU486212 lncRNA upstream 103653 8157485 ~ 8157697 (-) True G423367
TU486213 lncRNA upstream 136670 8190502 ~ 8192007 (-) True G423368
CI01000304_07961608_07968820.mRNA mRNA downstream 84661 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 343945 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 587180 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 725407 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 741899 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_08165245_08217042.mRNA mRNA upstream 111365 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 163802 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 275263 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 456638 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 513362 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
TU485601 other downstream 400907 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1270564 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1422111 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1570115 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 808391 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1514524 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1682914 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2099614 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2100027 10153859 ~ 10164330 (-) True G424458

Expression Profile