RNA id: TU485788



Basic Information


Item Value
RNA id TU485788
length 344
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G422988
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8086447 ~ 8086790 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGCACTGTGTTTTATTAAGCTCTTACAGAGATTTTCTAGAGTGAAAACGGACGCTTCATCTTTTGTTTGAAGTACAATAAACGTTATAAAACTCATCTGTAAAGTTCTGGCCATCATTCAGACGGGGTCCGGTACAACAGGCTTGTACTAATATAGTGGAAGAAGACAATATAAGTTATAACTGTAGTTGAACTAAACTATACCTGTTCTATCTCCATGCAGCATATATTTGCAGTTTCTGACATTATAGTGCGTCCTGACTGAATCCTGACACCAGAGAATCAGCTCCTGAAGCTCCGCCCTCTTAGGCCGAGCGCAGCAGCTCATTTGCATTTAAAGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU485766 lncRNA downstream 21538 8064658 ~ 8064909 (-) True G422967
TU485759 lncRNA downstream 32615 8053610 ~ 8053832 (-) True G422960
TU485758 lncRNA downstream 34845 8051094 ~ 8051602 (-) True G422959
TU485756 lncRNA downstream 41634 8044523 ~ 8044813 (-) True G422957
TU485750 lncRNA downstream 56964 8029210 ~ 8029483 (-) True G422951
TU486201 lncRNA upstream 61281 8148071 ~ 8148469 (-) True G423356
TU486212 lncRNA upstream 70695 8157485 ~ 8157697 (-) True G423367
TU486213 lncRNA upstream 103712 8190502 ~ 8192007 (-) True G423368
TU486182 lncRNA upstream 132818 8219608 ~ 8220174 (-) True G423337
TU486214 lncRNA upstream 145204 8231994 ~ 8235291 (-) True G423369
CI01000304_07961608_07968820.mRNA mRNA downstream 117498 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 376782 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 620017 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_07325899_07328203.mRNA mRNA downstream 758244 7325648 ~ 7328203 (-) True CI01000304_07325899_07328203
CI01000304_07303509_07309222.mRNA mRNA downstream 774736 7302824 ~ 7311711 (-) True CI01000304_07303509_07309222
CI01000304_08165245_08217042.mRNA mRNA upstream 78407 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_08218405_08218927.mRNA mRNA upstream 130844 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08329095_08386362.mRNA mRNA upstream 242305 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 423680 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 480404 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
TU485601 other downstream 433744 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1303401 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1454948 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1602952 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 775433 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1481566 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1649956 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 2066656 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 2067069 10153859 ~ 10164330 (-) True G424458

Expression Profile