RNA id: TU485857


Basic Information

Item Value
RNA id TU485857
length 369
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G423043
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8150802 ~ 8151170 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCTGCTTTGTTAAAAAAAACGTACATTAAAGCTGAAATCCAACCTGAATGATGACAACACAGAATAAAATACTATCACTAGTGATCATCAAATCCTTTTAACAGTTTATTTTACACACTTTGTGTTTAAGTCTTCCACTTTTTTCACAAAACCTTTGCTCTCTAGAAACCCAGTCAGTTTGGGTTAAAATTCTTTGAAGTTCAAGTATTAGCATTATAAACACTGAATTAATACCAACAAATGAAATTAAATTAAGGACATGCATCAGAAAAATTGGGAATGTTGGACAATAAATACATGAATATAACAGCTTGTTTTTGCAGTGTTGTCTAATGTCCGTTAAAGCAAAAGTGTCCAAAAGTGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485855 lncRNA upstream 2362 8148071 ~ 8148440 (+) True G423041
TU485771 lncRNA upstream 81403 8069062 ~ 8069399 (+) True G422972
TU485765 lncRNA upstream 85379 8064658 ~ 8065423 (+) True G422966
TU485590 lncRNA upstream 110572 8039812 ~ 8040230 (+) True G422803
TU485582 lncRNA upstream 123679 8026858 ~ 8027123 (+) True G422795
TU485860 lncRNA downstream 1687 8152857 ~ 8153236 (+) True G423046
TU485820 lncRNA downstream 9385 8160555 ~ 8161691 (+) True G423020
TU485811 lncRNA downstream 68444 8219614 ~ 8220183 (+) True G423011
TU485900 lncRNA downstream 124450 8275620 ~ 8279848 (+) True G423085
TU485908 lncRNA downstream 141717 8292887 ~ 8293121 (+) True G423093
CI01000304_08120416_08124549.mRNA mRNA upstream 26205 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 135498 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 170082 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_07927790_07957821.mRNA mRNA upstream 192340 7927790 ~ 7958462 (+) True CI01000304_07927790_07957821
CI01000304_07909498_07914625.mRNA mRNA upstream 234860 7909498 ~ 7915942 (+) True CI01000304_07909498_07914625
CI01000304_08222591_08229908.mRNA mRNA downstream 71421 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08232073_08235598.mRNA mRNA downstream 80123 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08547909_08562342.mRNA mRNA downstream 396739 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 431234 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08624038_08653167.mRNA mRNA downstream 472868 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
TU485573 other upstream 170067 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 666114 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 796470 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 1907805 6241233 ~ 6242997 (+) True G421162
TU483012 other upstream 2974011 5173223 ~ 5173339 (+) True G420524
TU485809 other downstream 80824 8234441 ~ 8234534 (+) True G423009
TU486091 other downstream 520600 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 797866 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1413435 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1969229 10120399 ~ 10127322 (+) True G424246

Expression Profile