RNA id: TU486182


Basic Information

Item Value
RNA id TU486182
length 567
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G423337
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8219608 ~ 8220174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGCTTTTCTCCTCCGTGTTCAATTATGACGTATCCTCTCCCGTGGCCTCCTGGGATAGAAAAGTATCGATCGAGGAACACTTGAGAATCTGGACGGAAGTAGTAGGTCATCCGGGAACTTCTCGACTACTCATTTATGATTACTGAGGTTTCTGACATACTTAATTGCTCGCCTACTGCTTTTTCCCTATTATATAGTAGAGAAGTAGGCGGTTTCGGACGCACTTTAAGTAGACGCACGTCCGCATCTCGCGAGAATTAGTACGTCACCTAGGTACTCTTTTTGCTTCGGACATACTTATTCGCTCGCCTACTGCTTTTCCTCTACTAAATAGTAGAGAAGTAGGCGGTTTCGGACGCAGCCAGTGTCACTCCTGCGTGTTTGTAAGATGTAAGTCACGTGACATACTTTCCTTTTCTTTAACACCGGGCTGAGGAAGTTTTTAGTTCAGATAAGACGTTCTCTGTATCAAACTCCACAAACAAGCAAGCAAGCGAACCACCACTAATCAGCAGCATTAAACAAATGGCACAGCCAACGAACACTCCAAGCTCCCTCCCCTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486213 lncRNA downstream 27601 8190502 ~ 8192007 (-) True G423368
TU486212 lncRNA downstream 61911 8157485 ~ 8157697 (-) True G423367
TU486201 lncRNA downstream 71139 8148071 ~ 8148469 (-) True G423356
TU485788 lncRNA downstream 132818 8086447 ~ 8086790 (-) True G422988
TU485766 lncRNA downstream 154699 8064658 ~ 8064909 (-) True G422967
TU486214 lncRNA upstream 11820 8231994 ~ 8235291 (-) True G423369
TU486220 lncRNA upstream 16708 8236882 ~ 8237130 (-) True G423375
TU486224 lncRNA upstream 21686 8241860 ~ 8242079 (-) True G423379
TU486296 lncRNA upstream 84010 8304184 ~ 8304715 (-) True G423448
TU486302 lncRNA upstream 97727 8317901 ~ 8322796 (-) True G423454
CI01000304_08218405_08218927.mRNA mRNA downstream 681 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08165245_08217042.mRNA mRNA downstream 2566 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_07961608_07968820.mRNA mRNA downstream 250659 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 509943 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_07464639_07466430.mRNA mRNA downstream 753178 7464235 ~ 7466430 (-) True CI01000304_07464639_07466430
CI01000304_08329095_08386362.mRNA mRNA upstream 108921 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08510508_08532975.mRNA mRNA upstream 290296 8510470 ~ 8533026 (-) True CI01000304_08510508_08532975
CI01000304_08567281_08570808.mRNA mRNA upstream 347020 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
CI01000304_08605819_08615439.mRNA mRNA upstream 384701 8604875 ~ 8617967 (-) True CI01000304_08605819_08615439
CI01000304_08680653_08681838.mRNA mRNA upstream 459957 8680131 ~ 8682389 (-) True CI01000304_08680653_08681838
TU485601 other downstream 566905 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1436562 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1588109 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 1736113 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 642049 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1348182 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1516572 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1933272 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1933685 10153859 ~ 10164330 (-) True G424458

Expression Profile