RNA id: TU485908


Basic Information

Item Value
RNA id TU485908
length 235
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G423093
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8292887 ~ 8293121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAATCAAAATAACAAATTTTCAACAATGGGCCGATTTCAAAACACTGCTTCATGAAGCTTCTGAGCTTTATGAATCTTTTGTTTCGAATTAGTGATTCGGATCTCCTATCAAACGGCCAAACTGCTGAAATCATGTGACTTTGGCACTCCGATTCACTGATTCGATTCGTAAAGCTCTGAAGCAGTGTTTTGAAATCGGCCCATATAGATATTGTTGAAAAGTCTTTATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485900 lncRNA upstream 13039 8275620 ~ 8279848 (+) True G423085
TU485811 lncRNA upstream 72704 8219614 ~ 8220183 (+) True G423011
TU485820 lncRNA upstream 131196 8160555 ~ 8161691 (+) True G423020
TU485860 lncRNA upstream 139651 8152857 ~ 8153236 (+) True G423046
TU485857 lncRNA upstream 141717 8150802 ~ 8151170 (+) True G423043
TU485914 lncRNA downstream 17751 8310872 ~ 8311078 (+) True G423099
TU485916 lncRNA downstream 19293 8312414 ~ 8312712 (+) True G423101
TU485920 lncRNA downstream 31616 8324737 ~ 8324963 (+) True G423105
TU485994 lncRNA downstream 143628 8436749 ~ 8436957 (+) True G423179
TU486012 lncRNA downstream 177163 8470284 ~ 8470504 (+) True G423197
CI01000304_08232073_08235598.mRNA mRNA upstream 57232 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08222591_08229908.mRNA mRNA upstream 61940 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 168290 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 277583 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 312167 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_08547909_08562342.mRNA mRNA downstream 254788 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 289283 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08624038_08653167.mRNA mRNA downstream 330917 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 378683 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 448276 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
TU485809 other upstream 57927 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 312152 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 808199 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 938555 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 2049890 6241233 ~ 6242997 (+) True G421162
TU486091 other downstream 378649 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 655915 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1271484 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1827278 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1895701 10188822 ~ 10189404 (+) False G424251

Expression Profile