RNA id: TU486012


Basic Information

Item Value
RNA id TU486012
length 221
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G423197
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8470284 ~ 8470504 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCTTTTAGACCATGCGCCAGGTGCACCGACCATTTTTCCCATTGTTAAACTAGCAAAAGTGGATTCGGACACGCCCTAAGTGCACTTGTGCCGTGCACTTTAGACCATGTGCTTAGATCGTTAAAATAGGGCCCAATAAGTCTATAATTCCACCCACTTTGAAGCGGTACTACAATAAAATGGAAAAGCAAACCGAGCCAAAGTAAAGCAAGCCGAGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU485994 lncRNA upstream 33327 8436749 ~ 8436957 (+) True G423179
TU485920 lncRNA upstream 145321 8324737 ~ 8324963 (+) True G423105
TU485916 lncRNA upstream 157572 8312414 ~ 8312712 (+) True G423101
TU485914 lncRNA upstream 159206 8310872 ~ 8311078 (+) True G423099
TU485908 lncRNA upstream 177163 8292887 ~ 8293121 (+) True G423093
TU486017 lncRNA downstream 6333 8476837 ~ 8477075 (+) True G423202
TU486052 lncRNA downstream 13398 8483902 ~ 8536866 (+) False G423234
TU486053 lncRNA downstream 13398 8483902 ~ 8536866 (+) True G423234
TU486065 lncRNA downstream 43402 8513906 ~ 8514257 (+) True G423242
TU486066 lncRNA downstream 51046 8521550 ~ 8522567 (+) True G423243
CI01000304_08232073_08235598.mRNA mRNA upstream 234629 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08222591_08229908.mRNA mRNA upstream 239337 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 345687 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 454980 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 489564 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_08547909_08562342.mRNA mRNA downstream 77405 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 111900 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08624038_08653167.mRNA mRNA downstream 153534 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 201300 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 270893 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
TU485809 other upstream 235324 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 489549 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 985596 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1115952 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 2227287 6241233 ~ 6242997 (+) True G421162
TU486091 other downstream 201266 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 478532 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1094101 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1649895 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1718318 10188822 ~ 10189404 (+) False G424251

Expression Profile