RNA id: TU486402


Basic Information

Item Value
RNA id TU486402
length 293
lncRNA type intronic
GC content 0.42
exon number 2
gene id G423551
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8513906 ~ 8514241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGGCCAGATCTGTGCCTTGCCACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGAACTCATGATTCTCATTTGCTCTGACATGCATTGTGAGCTGTAAGGTCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACATAGTTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATCAGAAGAAATGGACAGCACCTGAGTTAAATATATGAGTGTCACAGCAAAGGGTCTGAATACTTTTCTGTCAATATGGGGTGCTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486380 lncRNA downstream 35242 8478182 ~ 8478664 (-) True G423529
TU486375 lncRNA downstream 40030 8473674 ~ 8473876 (-) True G423524
TU486372 lncRNA downstream 46634 8467040 ~ 8467272 (-) True G423521
TU486367 lncRNA downstream 57125 8456446 ~ 8456781 (-) True G423516
TU486352 lncRNA downstream 78304 8435266 ~ 8435602 (-) True G423501
TU486409 lncRNA upstream 28219 8542460 ~ 8542686 (-) True G423557
TU486441 lncRNA upstream 157557 8671798 ~ 8672580 (-) True G423588
TU486442 lncRNA upstream 158435 8672676 ~ 8673012 (-) True G423589
TU486478 lncRNA upstream 434803 8949044 ~ 8949311 (-) True G423615
TU486849 lncRNA upstream 493367 9007608 ~ 9008693 (-) False G423960
CI01000304_08329095_08386362.mRNA mRNA downstream 127544 8329095 ~ 8386362 (-) True CI01000304_08329095_08386362
CI01000304_08218405_08218927.mRNA mRNA downstream 294979 8217634 ~ 8218927 (-) True CI01000304_08218405_08218927
CI01000304_08165245_08217042.mRNA mRNA downstream 296864 8165197 ~ 8217042 (-) True CI01000304_08165245_08217042
CI01000304_07961608_07968820.mRNA mRNA downstream 544957 7961565 ~ 7968949 (-) True CI01000304_07961608_07968820
CI01000304_07612069_07709665.mRNA mRNA downstream 804241 7612069 ~ 7709665 (-) True CI01000304_07612069_07709665
CI01000304_08567281_08570808.mRNA mRNA upstream 52953 8567194 ~ 8570808 (-) True CI01000304_08567281_08570808
CI01000304_08605819_08615439.mRNA mRNA upstream 90634 8604875 ~ 8617967 (-) True CI01000304_08605819_08615439
CI01000304_08680653_08681838.mRNA mRNA upstream 165890 8680131 ~ 8682389 (-) True CI01000304_08680653_08681838
CI01000304_08692093_08712203.mRNA mRNA upstream 177718 8691959 ~ 8712203 (-) True CI01000304_08692093_08712203
CI01000304_08727439_08731885.mRNA mRNA upstream 213075 8727316 ~ 8732117 (-) True CI01000304_08727439_08731885
TU485601 other downstream 861203 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 1730860 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 1882407 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 2030411 6477451 ~ 6479033 (-) False G422250
TU486232 other upstream 347982 8862223 ~ 8865296 (-) True G423386
TU487066 other upstream 1054115 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 1222505 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1639205 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1639618 10153859 ~ 10164330 (-) True G424458

Expression Profile