RNA id: TU486066


Basic Information

Item Value
RNA id TU486066
length 486
lncRNA type intronic
GC content 0.35
exon number 2
gene id G423243
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8521550 ~ 8522567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGATAGATAGATAGATAGATAGATAGATATTCATCTTTTTATATTATATTTCATATATATAAATTAATAATATGTTGCTTTGCTTACACTGTTAATCATGCGACCTTCAAAACCAGTGACATAAACACATGGAAACATTCAAAGACTGGTCAAATAAATAATAATAAATCACTGATGTTGTTTAATGTAAACATGAAGATGGATGCCTGCCTGTTTGTCTCTCTGATTATGTGAATGTCACTCCCTCATGGAGGCAATTAAACATGTTTAGTTTCCACCTGCTCCCAGGTTTTTTTCTGTGATGTCGAGCTTCTATACAAAACATCATGCACCACCCACAATCTACTGACTTAAAACAGTTCTGCTCATCCAATCAGGGGGTGGTTGCAATCCAATTATTCTTAAACTGCAGCAAATTTGACCTCTAGCATCTTTAAACTTACCATCACTTTGAGTTTCAGAGACTGGCAGCTAGATGGTGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486065 lncRNA upstream 7293 8513906 ~ 8514257 (+) True G423242
TU486017 lncRNA upstream 44475 8476837 ~ 8477075 (+) True G423202
TU486012 lncRNA upstream 51046 8470284 ~ 8470504 (+) True G423197
TU485994 lncRNA upstream 84593 8436749 ~ 8436957 (+) True G423179
TU485920 lncRNA upstream 196587 8324737 ~ 8324963 (+) True G423105
TU486075 lncRNA downstream 19863 8542430 ~ 8542677 (+) True G423252
TU486077 lncRNA downstream 76150 8598717 ~ 8599084 (+) True G423254
TU486079 lncRNA downstream 77882 8600449 ~ 8600652 (+) True G423256
TU486146 lncRNA downstream 339314 8861881 ~ 8862095 (+) True G423315
TU486140 lncRNA downstream 375415 8897982 ~ 8899925 (+) False G423310
CI01000304_08232073_08235598.mRNA mRNA upstream 285895 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08222591_08229908.mRNA mRNA upstream 290603 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 396953 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 506246 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_07979388_07979919.mRNA mRNA upstream 540830 7979078 ~ 7980720 (+) False CI01000304_07979388_07979919
CI01000304_08547909_08562342.mRNA mRNA downstream 25342 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08582404_08594691.mRNA mRNA downstream 59837 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08624038_08653167.mRNA mRNA downstream 101471 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 149237 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 218830 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
TU485809 other upstream 286590 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 540815 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1036862 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1167218 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 2278553 6241233 ~ 6242997 (+) True G421162
TU486091 other downstream 149203 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 426469 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 1042038 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1597832 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1666255 10188822 ~ 10189404 (+) False G424251

Expression Profile