RNA id: TU486079


Basic Information

Item Value
RNA id TU486079
length 204
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G423256
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8600449 ~ 8600652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAACTTAAATAATAAGAGCACAAGTACAGATCTGGAACTTCTTTAAGTCTGTCTAAATATCATTTAGTAATTGCAATGTCTTCTGGTCCATATCCTTTCCTTAGGAAGGTGTGCTAGACACTGATTAATGTAACATAAAAATACTATACTTATATATTTTGCTATTGTATTGTGGAGTGATACTTTCATAAACTTTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486077 lncRNA upstream 1365 8598717 ~ 8599084 (+) True G423254
TU486075 lncRNA upstream 57772 8542430 ~ 8542677 (+) True G423252
TU486052 lncRNA upstream 63583 8483902 ~ 8536866 (+) False G423234
TU486146 lncRNA downstream 261229 8861881 ~ 8862095 (+) True G423315
TU486140 lncRNA downstream 297330 8897982 ~ 8899925 (+) False G423310
TU486141 lncRNA downstream 297330 8897982 ~ 8908476 (+) True G423310
TU486149 lncRNA downstream 303859 8904511 ~ 8905000 (+) True G423318
TU486167 lncRNA downstream 315766 8916418 ~ 8934956 (+) True G423324
CI01000304_08582404_08594691.mRNA mRNA upstream 5565 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08547909_08562342.mRNA mRNA upstream 37845 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08232073_08235598.mRNA mRNA upstream 364794 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08222591_08229908.mRNA mRNA upstream 369502 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 475852 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_08624038_08653167.mRNA mRNA downstream 23386 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 71152 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 140745 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08864119_08871322.mRNA mRNA downstream 263125 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08878926_08892802.mRNA mRNA downstream 278274 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
TU485809 other upstream 365489 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 619714 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1115761 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1246117 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 2357452 6241233 ~ 6242997 (+) True G421162
TU486091 other downstream 71118 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 348384 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 963953 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1519747 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1588170 10188822 ~ 10189404 (+) False G424251

Expression Profile