RNA id: TU486146


Basic Information

Item Value
RNA id TU486146
length 215
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G423315
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8861881 ~ 8862095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAAAATAAGAACAAAAACAATGTTATTAAGGATTTTATGTTCCTTAATAACCATAAGGATTGTAGCGCCATCGTCTGCACAAATACCTAATAACAACCTAATGAAACGCCTTGCTTTTCTGTCGCTGTTCTCAGCACTGCGAATATGGCTGTTGCCATGGCAACCCTGAACTACAGCTGAACTAAGATCAGCAAGTGTGAACGCTCATGTGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486079 lncRNA upstream 261229 8600449 ~ 8600652 (+) True G423256
TU486077 lncRNA upstream 262797 8598717 ~ 8599084 (+) True G423254
TU486075 lncRNA upstream 319204 8542430 ~ 8542677 (+) True G423252
TU486053 lncRNA upstream 325015 8483902 ~ 8536866 (+) True G423234
TU486140 lncRNA downstream 35887 8897982 ~ 8899925 (+) False G423310
TU486141 lncRNA downstream 35887 8897982 ~ 8908476 (+) True G423310
TU486149 lncRNA downstream 42416 8904511 ~ 8905000 (+) True G423318
TU486167 lncRNA downstream 54323 8916418 ~ 8934956 (+) True G423324
TU486512 lncRNA downstream 145900 9007995 ~ 9008699 (+) True G423649
CI01000304_08741397_08752689.mRNA mRNA upstream 109192 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08671901_08672203.mRNA mRNA upstream 189328 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08624038_08653167.mRNA mRNA upstream 208331 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08582404_08594691.mRNA mRNA upstream 266997 8582404 ~ 8594884 (+) True CI01000304_08582404_08594691
CI01000304_08547909_08562342.mRNA mRNA upstream 299277 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08864119_08871322.mRNA mRNA downstream 1682 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08878926_08892802.mRNA mRNA downstream 16831 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08895917_08897236.mRNA mRNA downstream 33508 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_09030903_09042018.mRNA mRNA downstream 168471 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_09178746_09214392.mRNA mRNA downstream 316579 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
TU486091 other upstream 189326 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 626921 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 881146 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1377193 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1507549 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU486477 other downstream 86941 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 702510 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1258304 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1326727 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1327220 10189315 ~ 10189404 (+) True G424251

Expression Profile