RNA id: TU486141


Basic Information

Item Value
RNA id TU486141
length 303
lncRNA type read_through
GC content 0.34
exon number 2
gene id G423310
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8897982 ~ 8908476 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCAGACTCAATTATTTATTCATTTCAACTCCAAAAAGAGTACAAGGACCAAACAGTGACATGGTTTGAAAGACCTGCCAAAATACACATCAAACCCTGAAACCGACAGAAGAGTAACTGACATCACTGGAATGAGAGGAACAGCAAAGCTTGTTATTTTTTATTATGTCCATTACATGACACTTTAGCTGACAAAGTTTGCATTAAATGATTTCACACTTATGAGAGAATGCACTTAAATATTAGCCCTTAAATTAAAGCGATTTTAAAGGGGTTAGTTCACCCAAAAATGAAAATTATGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486146 lncRNA upstream 35887 8861881 ~ 8862095 (+) True G423315
TU486079 lncRNA upstream 297330 8600449 ~ 8600652 (+) True G423256
TU486077 lncRNA upstream 298898 8598717 ~ 8599084 (+) True G423254
TU486075 lncRNA upstream 355305 8542430 ~ 8542677 (+) True G423252
TU486066 lncRNA upstream 375415 8521550 ~ 8522567 (+) True G423243
TU486167 lncRNA downstream 7942 8916418 ~ 8934956 (+) True G423324
TU486512 lncRNA downstream 99519 9007995 ~ 9008699 (+) True G423649
TU486546 lncRNA downstream 156622 9065098 ~ 9068769 (+) True G423681
TU486533 lncRNA downstream 161613 9070089 ~ 9128263 (+) True G423670
TU486535 lncRNA downstream 220347 9128823 ~ 9134354 (+) True G423672
CI01000304_08895917_08897236.mRNA mRNA upstream 450 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 3933 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 26293 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08741397_08752689.mRNA mRNA upstream 145293 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08671901_08672203.mRNA mRNA upstream 225429 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_09030903_09042018.mRNA mRNA downstream 122090 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_09178746_09214392.mRNA mRNA downstream 270198 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09298662_09308685.mRNA mRNA downstream 390106 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 402054 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 417231 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
TU486091 other upstream 225427 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 663022 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 917247 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1413294 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1543650 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU486477 other downstream 40560 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 656129 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1211923 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1280346 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1280839 10189315 ~ 10189404 (+) True G424251

Expression Profile