RNA id: TU486149


Basic Information

Item Value
RNA id TU486149
length 410
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G423318
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8904511 ~ 8905000 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTATGGCTCATTACAATTGTGCATTAGTAAAAGTCAAACATTGACCCATTTGCTTTCCTTTGTGAAAAAGAAGGCCAAGGAACAGTCTGCTGTTTATCCAATAAAGCTTACTTAGAGAAAGCCATGGTACCTTTTTGCTGTATTATGATATTATATAATACATGAACACAATAACAGGCTCATTTAAAGCCAAACTATGTAATTGTTCCTGTTCCTGAGAGAGCACCATTTTGTTGCTGTTGAATTAAATCAAGTAGTTTTATCAGATAAAGACTTCATGTATCTCTTGATGATACGGTGCATATCAGCGTATCTCTTCTTCAGCTTCTGCATCTCTCTTTCTTCTTCCTCTTGCAGCTTAGCAATGAAGCTTTGTAAAACAGGAAGCTCAAACTTGATGTATTGTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486140 lncRNA upstream 4586 8897982 ~ 8899925 (+) False G423310
TU486146 lncRNA upstream 42416 8861881 ~ 8862095 (+) True G423315
TU486079 lncRNA upstream 303859 8600449 ~ 8600652 (+) True G423256
TU486077 lncRNA upstream 305427 8598717 ~ 8599084 (+) True G423254
TU486075 lncRNA upstream 361834 8542430 ~ 8542677 (+) True G423252
TU486167 lncRNA downstream 11418 8916418 ~ 8934956 (+) True G423324
TU486512 lncRNA downstream 102995 9007995 ~ 9008699 (+) True G423649
TU486546 lncRNA downstream 160098 9065098 ~ 9068769 (+) True G423681
TU486533 lncRNA downstream 165089 9070089 ~ 9128263 (+) True G423670
TU486535 lncRNA downstream 223823 9128823 ~ 9134354 (+) True G423672
CI01000304_08895917_08897236.mRNA mRNA upstream 6979 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 10462 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 32822 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08741397_08752689.mRNA mRNA upstream 151822 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08671901_08672203.mRNA mRNA upstream 231958 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_09030903_09042018.mRNA mRNA downstream 125566 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_09178746_09214392.mRNA mRNA downstream 273674 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09298662_09308685.mRNA mRNA downstream 393582 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 405530 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 420707 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
TU486091 other upstream 231956 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 669551 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 923776 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1419823 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1550179 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU486477 other downstream 44036 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 659605 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1215399 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1283822 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1284315 10189315 ~ 10189404 (+) True G424251

Expression Profile