RNA id: TU486477


Basic Information

Item Value
RNA id TU486477
length 387
RNA type TUCP
GC content 0.51
exon number 1
gene id G423614
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8949036 ~ 8949422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCTTCAGATTAGCTCAAGAACAGTGCGTAGAGAGCTTCATGGAATGGGTTTCCATGGCCGAGCAGCTGCATCCAAGCCTTACATCACCAAGTGCAATGCAAAGCATCGGATGCAGTGGTGTAAAGCACGCCGCCACTGGACTCTAGAGCAGTGGAGACGTGTTCTCTGGAGTGACGAATCACACTTCTCTGTCTGGCAATCCGATGGAAGAGTCTGGGTTTGGCGGTTGCCAGGAGAACGGTACTTGCCTGACTGCATTGTGCCAAGTGTAAAGTTTGGTGGAGGGGGGATTATGGTGTGGGGTTGTTTTTCAGGGGTTGGGCTTGGCCCCTTAGTTCCAGTGAAAAGAACTCTTAATGCTTCAGCTTACCAAGACATTTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486167 lncRNA upstream 14080 8916418 ~ 8934956 (+) True G423324
TU486141 lncRNA upstream 40560 8897982 ~ 8908476 (+) True G423310
TU486149 lncRNA upstream 44036 8904511 ~ 8905000 (+) True G423318
TU486140 lncRNA upstream 49111 8897982 ~ 8899925 (+) False G423310
TU486146 lncRNA upstream 86941 8861881 ~ 8862095 (+) True G423315
TU486512 lncRNA downstream 58573 9007995 ~ 9008699 (+) True G423649
TU486546 lncRNA downstream 115676 9065098 ~ 9068769 (+) True G423681
TU486533 lncRNA downstream 120667 9070089 ~ 9128263 (+) True G423670
TU486535 lncRNA downstream 179401 9128823 ~ 9134354 (+) True G423672
TU486569 lncRNA downstream 212299 9161721 ~ 9162080 (+) True G423696
CI01000304_08895917_08897236.mRNA mRNA upstream 51504 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 54987 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 77347 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08741397_08752689.mRNA mRNA upstream 196347 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08671901_08672203.mRNA mRNA upstream 276483 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_09030903_09042018.mRNA mRNA downstream 81144 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_09178746_09214392.mRNA mRNA downstream 229252 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09298662_09308685.mRNA mRNA downstream 349160 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 361108 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 376285 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
TU486091 other upstream 276481 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 714076 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 968301 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1464348 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1594704 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU486746 other downstream 615183 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1170977 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1239400 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1239893 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1605864 10555614 ~ 10555704 (+) True G424559

Expression Profile