RNA id: TU486478


Basic Information

Item Value
RNA id TU486478
length 268
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G423615
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8949044 ~ 8949311 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTACACTTGGCACAATGCAGTCAGGCAAGTACCGTTCTCCTGGCAACCGCCAAACCCAGACTCTTCCATCGGATTGCCAGACAGAGAAGTGTGATTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTGCATCCGATGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCTGCTCGGCCATGGAAACCCATTCCATGAAGCTCTCTACGCACTGTTCTTGAGCTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486442 lncRNA downstream 276032 8672676 ~ 8673012 (-) True G423589
TU486441 lncRNA downstream 276464 8671798 ~ 8672580 (-) True G423588
TU486409 lncRNA downstream 406358 8542460 ~ 8542686 (-) True G423557
TU486402 lncRNA downstream 434803 8513906 ~ 8514241 (-) True G423551
TU486380 lncRNA downstream 470380 8478182 ~ 8478664 (-) True G423529
TU486849 lncRNA upstream 58297 9007608 ~ 9008693 (-) False G423960
TU486850 lncRNA upstream 58297 9007608 ~ 9008693 (-) True G423960
TU486864 lncRNA upstream 88302 9037613 ~ 9098217 (-) True G423972
TU486898 lncRNA upstream 212491 9161802 ~ 9162014 (-) True G424004
TU486900 lncRNA upstream 215207 9164518 ~ 9164832 (-) True G424006
CI01000304_08913076_08936241.mRNA mRNA downstream 12803 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 38554 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08899490_08900383.mRNA mRNA downstream 48272 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_08836330_08859572.mRNA mRNA downstream 88315 8835882 ~ 8860729 (-) True CI01000304_08836330_08859572
CI01000304_08829163_08833955.mRNA mRNA downstream 115089 8828785 ~ 8833955 (-) True CI01000304_08829163_08833955
CI01000304_09046090_09129612.mRNA mRNA upstream 96779 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_09284328_09286980.mRNA mRNA upstream 334878 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09342385_09345935.mRNA mRNA upstream 392543 9341854 ~ 9345935 (-) True CI01000304_09342385_09345935
CI01000304_09508090_09519201.mRNA mRNA upstream 557986 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 617419 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
TU486232 other downstream 83748 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1296341 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2165998 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2317545 6631086 ~ 6631499 (-) True G422354
TU484957 other downstream 2465549 6477451 ~ 6479033 (-) False G422250
TU487066 other upstream 619045 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 787435 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 1204135 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 1204548 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 1241263 10192696 ~ 10192895 (-) True G424459

Expression Profile