RNA id: TU486569


Basic Information

Item Value
RNA id TU486569
length 360
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G423696
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9161721 ~ 9162080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTTTCTGAAGCGATGAGAATACATTTTGTGCACAAAAACAAAACAAAAATAACGACTTTACTCAACAATCTCTTCTCTTCCCTGTCATTATCCTTATGTGGTTGCTGCAGGAAGCACAGTGAAGGCTTTCGTGTTTACGTCTGAACGCCAGCTCAGTATTGGCCAAAGCTGCACACGTGAGCAGCACGACGCATGCGTGTGATGCTGATGCAGGAGCCAGCCAATAATGAGTCGCCGTTCTGACGTAGAACCTGTAATCGCTGGACGTAAACGTATGAGAATGACACAGAAGGGAAGATATTGTTAAATAAAGTAGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTTGTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486535 lncRNA upstream 27367 9128823 ~ 9134354 (+) True G423672
TU486533 lncRNA upstream 33458 9070089 ~ 9128263 (+) True G423670
TU486546 lncRNA upstream 92952 9065098 ~ 9068769 (+) True G423681
TU486512 lncRNA upstream 153022 9007995 ~ 9008699 (+) True G423649
TU486167 lncRNA upstream 226765 8916418 ~ 8934956 (+) True G423324
TU486580 lncRNA downstream 32225 9194305 ~ 9194526 (+) True G423707
TU486597 lncRNA downstream 64417 9226497 ~ 9226933 (+) True G423724
TU486598 lncRNA downstream 64897 9226977 ~ 9227317 (+) True G423725
TU486653 lncRNA downstream 89127 9251207 ~ 9251407 (+) True G423774
TU486658 lncRNA downstream 93853 9255933 ~ 9256166 (+) True G423779
CI01000304_09030903_09042018.mRNA mRNA upstream 119680 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_08895917_08897236.mRNA mRNA upstream 264189 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 267672 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 290032 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08741397_08752689.mRNA mRNA upstream 409032 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_09178746_09214392.mRNA mRNA downstream 16594 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09298662_09308685.mRNA mRNA downstream 136502 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 148450 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 163627 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
CI01000304_09359193_09364869.mRNA mRNA downstream 197017 9359097 ~ 9365174 (+) True CI01000304_09359193_09364869
TU486477 other upstream 212299 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 489166 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 926761 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1180986 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1677033 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 402525 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 958319 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1026742 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 1027235 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1393206 10555614 ~ 10555704 (+) True G424559

Expression Profile