RNA id: TU486678


Basic Information

Item Value
RNA id TU486678
length 202
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G423799
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9281232 ~ 9281433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATATGTCCTCTTTCTATACTGAATGCATCTTACTCCCACATGTGTCTCAGTTACTAAAGGATCAGACTGTATTCATTCATTCTTTCTTTCTTTGCTTTTTGTATTCAACATGGAATGCACTGAAATATAATAAAGAAAAATGTAATTTGTCACCTCATACATCTTTCATGATATTTTCAATTTGAAGATTTTAAAATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486658 lncRNA upstream 25066 9255933 ~ 9256166 (+) True G423779
TU486653 lncRNA upstream 29825 9251207 ~ 9251407 (+) True G423774
TU486598 lncRNA upstream 53915 9226977 ~ 9227317 (+) True G423725
TU486597 lncRNA upstream 54299 9226497 ~ 9226933 (+) True G423724
TU486580 lncRNA upstream 86706 9194305 ~ 9194526 (+) True G423707
TU486626 lncRNA downstream 2695 9284128 ~ 9287449 (+) True G423747
TU486684 lncRNA downstream 11370 9292803 ~ 9293163 (+) True G423803
TU486690 lncRNA downstream 21396 9302829 ~ 9303076 (+) True G423809
TU486632 lncRNA downstream 47620 9329053 ~ 9329639 (+) True G423753
TU486624 lncRNA downstream 178419 9459852 ~ 9462938 (+) True CI01000304_09457224_09468602
CI01000304_09178746_09214392.mRNA mRNA upstream 66124 9178674 ~ 9215108 (+) True CI01000304_09178746_09214392
CI01000304_09030903_09042018.mRNA mRNA upstream 239191 9030566 ~ 9042041 (+) True CI01000304_09030903_09042018
CI01000304_08895917_08897236.mRNA mRNA upstream 383700 8895603 ~ 8897532 (+) True CI01000304_08895917_08897236
CI01000304_08878926_08892802.mRNA mRNA upstream 387183 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
CI01000304_08864119_08871322.mRNA mRNA upstream 409543 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_09298662_09308685.mRNA mRNA downstream 17149 9298582 ~ 9308867 (+) True CI01000304_09298662_09308685
CI01000304_09310530_09315160.mRNA mRNA downstream 29097 9310530 ~ 9315193 (+) True CI01000304_09310530_09315160
CI01000304_09325707_09339195.mRNA mRNA downstream 44274 9325707 ~ 9339741 (+) True CI01000304_09325707_09339195
CI01000304_09359193_09364869.mRNA mRNA downstream 77664 9359097 ~ 9365174 (+) True CI01000304_09359193_09364869
CI01000304_09367881_09372547.mRNA mRNA downstream 86038 9367471 ~ 9374245 (+) True CI01000304_09367881_09372547
TU486477 other upstream 331810 8949036 ~ 8949422 (+) True G423614
TU486091 other upstream 608677 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU485809 other upstream 1046272 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 1300497 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1796544 7484141 ~ 7484688 (+) True G421435
TU486746 other downstream 283172 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 838966 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 907389 10188822 ~ 10189404 (+) False G424251
TU487195 other downstream 907882 10189315 ~ 10189404 (+) True G424251
TU487556 other downstream 1273853 10555614 ~ 10555704 (+) True G424559

Expression Profile