Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU486626 |
| length | 1155 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 4 |
| gene id | G423747 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 9284128 ~ 9287449 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU486678 | lncRNA | upstream | 2695 | 9281232 ~ 9281433 (+) | True | G423799 |
| TU486658 | lncRNA | upstream | 27962 | 9255933 ~ 9256166 (+) | True | G423779 |
| TU486653 | lncRNA | upstream | 32721 | 9251207 ~ 9251407 (+) | True | G423774 |
| TU486598 | lncRNA | upstream | 56811 | 9226977 ~ 9227317 (+) | True | G423725 |
| TU486597 | lncRNA | upstream | 57195 | 9226497 ~ 9226933 (+) | True | G423724 |
| TU486684 | lncRNA | downstream | 5354 | 9292803 ~ 9293163 (+) | True | G423803 |
| TU486690 | lncRNA | downstream | 15380 | 9302829 ~ 9303076 (+) | True | G423809 |
| TU486632 | lncRNA | downstream | 41604 | 9329053 ~ 9329639 (+) | True | G423753 |
| TU486624 | lncRNA | downstream | 172403 | 9459852 ~ 9462938 (+) | True | CI01000304_09457224_09468602 |
| TU486710 | lncRNA | downstream | 230422 | 9517871 ~ 9518357 (+) | True | G423826 |
| CI01000304_09178746_09214392.mRNA | mRNA | upstream | 69020 | 9178674 ~ 9215108 (+) | True | CI01000304_09178746_09214392 |
| CI01000304_09030903_09042018.mRNA | mRNA | upstream | 242087 | 9030566 ~ 9042041 (+) | True | CI01000304_09030903_09042018 |
| CI01000304_08895917_08897236.mRNA | mRNA | upstream | 386596 | 8895603 ~ 8897532 (+) | True | CI01000304_08895917_08897236 |
| CI01000304_08878926_08892802.mRNA | mRNA | upstream | 390079 | 8878926 ~ 8894049 (+) | True | CI01000304_08878926_08892802 |
| CI01000304_08864119_08871322.mRNA | mRNA | upstream | 412439 | 8863777 ~ 8871689 (+) | True | CI01000304_08864119_08871322 |
| CI01000304_09298662_09308685.mRNA | mRNA | downstream | 11133 | 9298582 ~ 9308867 (+) | True | CI01000304_09298662_09308685 |
| CI01000304_09310530_09315160.mRNA | mRNA | downstream | 23081 | 9310530 ~ 9315193 (+) | True | CI01000304_09310530_09315160 |
| CI01000304_09325707_09339195.mRNA | mRNA | downstream | 38258 | 9325707 ~ 9339741 (+) | True | CI01000304_09325707_09339195 |
| CI01000304_09359193_09364869.mRNA | mRNA | downstream | 71648 | 9359097 ~ 9365174 (+) | True | CI01000304_09359193_09364869 |
| CI01000304_09367881_09372547.mRNA | mRNA | downstream | 80022 | 9367471 ~ 9374245 (+) | True | CI01000304_09367881_09372547 |
| TU486477 | other | upstream | 334706 | 8949036 ~ 8949422 (+) | True | G423614 |
| TU486091 | other | upstream | 611573 | 8671770 ~ 8672555 (+) | True | CI01000304_08671901_08672203 |
| TU485809 | other | upstream | 1049168 | 8234441 ~ 8234534 (+) | True | G423009 |
| TU485573 | other | upstream | 1303393 | 7978628 ~ 7978814 (+) | True | G422786 |
| TU484021 | other | upstream | 1799440 | 7484141 ~ 7484688 (+) | True | G421435 |
| TU486746 | other | downstream | 277156 | 9564605 ~ 9565573 (+) | True | CI01000304_09564068_09565679 |
| TU487178 | other | downstream | 832950 | 10120399 ~ 10127322 (+) | True | G424246 |
| TU487194 | other | downstream | 901373 | 10188822 ~ 10189404 (+) | False | G424251 |
| TU487195 | other | downstream | 901866 | 10189315 ~ 10189404 (+) | True | G424251 |
| TU487556 | other | downstream | 1267837 | 10555614 ~ 10555704 (+) | True | G424559 |
