RNA id: TU486947



Basic Information


Item Value
RNA id TU486947
length 190
lncRNA type read_through
GC content 0.38
exon number 2
gene id G424051
representative True

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 9316659 ~ 9374445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAAAAAAAAAAAAAAAAGTTCCCAGCATGTCTATCACCTTTATCAAGCCTGTAAATGCTTCTTGGATTAACTACCTATTAGTTTCTTTTCTTGGATGAACTTGACATTGGACAGAACTTCCGCCGAGAGCTCAATGGCCTGGTTGAAACCGTTCTCTCCTCCATATGATATGTCAACCAGCTTCAGAA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU486991 lncRNA downstream 14378 9301831 ~ 9302281 (-) True G424091
TU486989 lncRNA downstream 20593 9295844 ~ 9296066 (-) True G424089
TU486988 lncRNA downstream 23536 9292696 ~ 9293123 (-) True G424088
TU486979 lncRNA downstream 52916 9263533 ~ 9263743 (-) True G424079
TU486975 lncRNA downstream 60312 9255908 ~ 9256347 (-) True G424075
TU487012 lncRNA upstream 6047 9380492 ~ 9394406 (-) False G424110
TU487014 lncRNA upstream 9752 9384197 ~ 9400310 (-) True G424110
TU487027 lncRNA upstream 40975 9415420 ~ 9418187 (-) True G424123
TU486966 lncRNA upstream 66892 9441337 ~ 9504761 (-) True G424066
TU486972 lncRNA upstream 67959 9442404 ~ 9449831 (-) True G424072
CI01000304_09284328_09286980.mRNA mRNA downstream 29627 9284189 ~ 9287032 (-) True CI01000304_09284328_09286980
CI01000304_09046090_09129612.mRNA mRNA downstream 187047 9046090 ~ 9129612 (-) True CI01000304_09046090_09129612
CI01000304_08913076_08936241.mRNA mRNA downstream 380418 8912702 ~ 8936241 (-) True CI01000304_08913076_08936241
CI01000304_08904762_08909795.mRNA mRNA downstream 406169 8904478 ~ 8910490 (-) True CI01000304_08904762_08909795
CI01000304_08899490_08900383.mRNA mRNA downstream 415887 8899161 ~ 8900772 (-) True CI01000304_08899490_08900383
CI01000304_09508090_09519201.mRNA mRNA upstream 132852 9507297 ~ 9519333 (-) True CI01000304_09508090_09519201
CI01000304_09566730_09575706.mRNA mRNA upstream 192285 9566730 ~ 9575706 (-) False CI01000304_09566730_09575706
CI01000304_09577749_09578512.mRNA mRNA upstream 201674 9576119 ~ 9578512 (-) True CI01000304_09577749_09578512
CI01000304_09609674_09619712.mRNA mRNA upstream 235065 9609510 ~ 9620030 (-) True CI01000304_09609674_09619712
CI01000304_09622805_09640521.mRNA mRNA upstream 247931 9622376 ~ 9640540 (-) True CI01000304_09622805_09640521
TU486232 other downstream 451363 8862223 ~ 8865296 (-) True G423386
TU485601 other downstream 1663956 7630159 ~ 7652703 (-) True G422810
TU485117 other downstream 2533613 6744679 ~ 6783046 (-) True G422378
TU485082 other downstream 2685160 6631086 ~ 6631499 (-) True G422354
TU484958 other downstream 2833164 6477451 ~ 6479033 (-) True G422250
TU487066 other upstream 193911 9568356 ~ 9569034 (-) True CI01000304_09566730_09575706
TU487077 other upstream 362301 9739353 ~ 9739471 (-) True G424168
TU487428 other upstream 779001 10153446 ~ 10164330 (-) False G424458
TU487429 other upstream 779414 10153859 ~ 10164330 (-) True G424458
TU487433 other upstream 816129 10192696 ~ 10192895 (-) True G424459

Expression Profile