Item | Value |
---|---|
RNA id | TU486947 |
length | 190 |
lncRNA type | read_through |
GC content | 0.38 |
exon number | 2 |
gene id | G424051 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 9316659 ~ 9374445 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU486991 | lncRNA | downstream | 14378 | 9301831 ~ 9302281 (-) | True | G424091 |
TU486989 | lncRNA | downstream | 20593 | 9295844 ~ 9296066 (-) | True | G424089 |
TU486988 | lncRNA | downstream | 23536 | 9292696 ~ 9293123 (-) | True | G424088 |
TU486979 | lncRNA | downstream | 52916 | 9263533 ~ 9263743 (-) | True | G424079 |
TU486975 | lncRNA | downstream | 60312 | 9255908 ~ 9256347 (-) | True | G424075 |
TU487012 | lncRNA | upstream | 6047 | 9380492 ~ 9394406 (-) | False | G424110 |
TU487014 | lncRNA | upstream | 9752 | 9384197 ~ 9400310 (-) | True | G424110 |
TU487027 | lncRNA | upstream | 40975 | 9415420 ~ 9418187 (-) | True | G424123 |
TU486966 | lncRNA | upstream | 66892 | 9441337 ~ 9504761 (-) | True | G424066 |
TU486972 | lncRNA | upstream | 67959 | 9442404 ~ 9449831 (-) | True | G424072 |
CI01000304_09284328_09286980.mRNA | mRNA | downstream | 29627 | 9284189 ~ 9287032 (-) | True | CI01000304_09284328_09286980 |
CI01000304_09046090_09129612.mRNA | mRNA | downstream | 187047 | 9046090 ~ 9129612 (-) | True | CI01000304_09046090_09129612 |
CI01000304_08913076_08936241.mRNA | mRNA | downstream | 380418 | 8912702 ~ 8936241 (-) | True | CI01000304_08913076_08936241 |
CI01000304_08904762_08909795.mRNA | mRNA | downstream | 406169 | 8904478 ~ 8910490 (-) | True | CI01000304_08904762_08909795 |
CI01000304_08899490_08900383.mRNA | mRNA | downstream | 415887 | 8899161 ~ 8900772 (-) | True | CI01000304_08899490_08900383 |
CI01000304_09508090_09519201.mRNA | mRNA | upstream | 132852 | 9507297 ~ 9519333 (-) | True | CI01000304_09508090_09519201 |
CI01000304_09566730_09575706.mRNA | mRNA | upstream | 192285 | 9566730 ~ 9575706 (-) | False | CI01000304_09566730_09575706 |
CI01000304_09577749_09578512.mRNA | mRNA | upstream | 201674 | 9576119 ~ 9578512 (-) | True | CI01000304_09577749_09578512 |
CI01000304_09609674_09619712.mRNA | mRNA | upstream | 235065 | 9609510 ~ 9620030 (-) | True | CI01000304_09609674_09619712 |
CI01000304_09622805_09640521.mRNA | mRNA | upstream | 247931 | 9622376 ~ 9640540 (-) | True | CI01000304_09622805_09640521 |
TU486232 | other | downstream | 451363 | 8862223 ~ 8865296 (-) | True | G423386 |
TU485601 | other | downstream | 1663956 | 7630159 ~ 7652703 (-) | True | G422810 |
TU485117 | other | downstream | 2533613 | 6744679 ~ 6783046 (-) | True | G422378 |
TU485082 | other | downstream | 2685160 | 6631086 ~ 6631499 (-) | True | G422354 |
TU484958 | other | downstream | 2833164 | 6477451 ~ 6479033 (-) | True | G422250 |
TU487066 | other | upstream | 193911 | 9568356 ~ 9569034 (-) | True | CI01000304_09566730_09575706 |
TU487077 | other | upstream | 362301 | 9739353 ~ 9739471 (-) | True | G424168 |
TU487428 | other | upstream | 779001 | 10153446 ~ 10164330 (-) | False | G424458 |
TU487429 | other | upstream | 779414 | 10153859 ~ 10164330 (-) | True | G424458 |
TU487433 | other | upstream | 816129 | 10192696 ~ 10192895 (-) | True | G424459 |